Changes between Version 6 and Version 7 of SopConvertLifeLinesGenoData

Timestamp:

2012-04-04T06:40:06+02:00 (13 years ago)

Author:

Morris Swertz

Comment:

--

SopConvertLifeLinesGenoData

@@ -74 +74 @@
  
 * May take some time!
-== Further Genodata ==
+=== Step 4: convert into dosage format (MISSING!) ===
 
-The commands above generate a single large file for the study in question. From this researchers would like some further file manipulation to be done: 
- * Supply the large genodata in binary format, using command:
-     {{{ plink --tfile <data> --make-bed --out <data> }}}
+=== Step 5: convert into other formats ==
+
+
+Convert the large genodata from TPED into .bed, .bim. and .bam files:
+ {{{#!sh 
+plink --tfile <data> --make-bed --out <data> 
+}}}
+
      This should generate .bed, .bim and .fam files.
  * Supply the data also in separate files per chromosome. This can be done with the commands:
@@ -92 +97 @@
 
 A schematic overview of the two export paths described above.
+A schematic overview of the two export paths described above.