As a biobank data manager, I want to have a Catalog of the biobank phenotype data

TracNav(MolgenisAppStories)?

Scrum: ticket:1051

How to demo

• We can load data dictionaries from LL and DataSHaPeR into Measurement, Protocol and Category
• We introduce a TreeViewer? to render Protocols and subprotocols + the attached measurements.
• Measurements of the tree can be clicked to view detailed description.
• Measurements in the tree can be selected and saved in a list (shopping cart).

Precondition

• A data dictionary listing questions and questionnaires is available
• This data has been converted into 'pheno' format

Acceptance criteria

• All (LifeLines/BioSHaRE) features are loaded into Measurement, Catagory and Protocol table
• Catalog viewer implemented as selectable tree view + table (protocols + measurements)
• Individual nodes in the tree can be selected; then details on Measurement are shown
• Catalog interface to LL catalog and DataSHaPER incorporated
• Shopping cart mechanism implemented
• Nodes in the tree can be selected via [v] box
• Phenotype and genotype meta data viewable and selectable
• (LifeLines) Meta data from both stage layer and generic layer properly displayed

Status

• Functional design / mock-up of Catalog on Catalogue
• We still need a technical design of the Catalog (????)
• Despoina and Chao need LL metadata to fill their first version of the catalog with.
• (LifeLines) Joris will provide them these data, however, they are still incomplete and will probably change.