As an admin we want to deploy new molgenis VMs with cluster access

TracNav(MolgenisAppStories)?

Scrum: ticket:1068

How to demo:

• There is a standard VM for MOLGENIS apps
• There is a SOP for LifeLines
• There is a test procedure to verify working and secure installation

Pre-condition

• (LifeLines) StoryConvertPhenoData
• (LifeLines) StoryConvertGenoData

Acceptance criteria:

• We will have one standard VM that Ger can clone all the time for studyX. See VMRequirements
• There is a SOP to ask target-beheer to create a new VM for particular user and group
• VMs will have a mount to gpfs2 that is on /target/gpfs2/lifelines/studyX
• The Pheno and Geno data will be put in /target/gpfs2/lifelines/studyX/rawdata
• Tools like PLINK and PLINKSeq are shared folder /target/gpfs2/lifelines/tools
• (LifeLines only) the firewall is closed for outside messages for the user
• There is an installation script to create research portal and load geno and pheno data

SOP

• LifeLines official doet aanvraag bij target beheer voor VM + bijbehorende gebruikers
• target beheer maakt kopie van de standaard 'molgenis' VM en lanceert op GPFS
• target beheer voegt de specifieke groep, gebruikers + firewalls toe aan VM en cluster
• target beheer geeft VM aan LifeLines official om te vullen met data via automatische scriptje
• LifeLines beheerder runt test of Internet inderdaad dicht zit en alles naar behoren werkt

Status:

• Joeri makes appointment with Ger and Morris on Wednesday morning to discuss [done]
• Requirements on VMRequirements

FAQ

Will Molgenis by running inside the VM or inside the WOM?

Inside VM. Just as always.