Changes between Version 158 and Version 159 of WikiStart


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Timestamp:
2012-12-17T13:22:05+01:00 (12 years ago)
Author:
antonak
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  • WikiStart

    v158 v159  
    22
    33= Welcome to MOLGENIS =
    4 
    5 MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research.
    6 Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.
     4MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.
    75
    86= Using the software =
    9 
    107MOLGENIS applications:
    118
    12 * xQTL Workbench for multi-level QTL mapping ([wiki:xQTL project], [http://dx.doi.org/10.1093/bioinformatics/bts049 publication])
    13 * Dystrophic Epidermolysis Bullosa (deb-central) mutation database ([http://www.deb-central.org project], [http://www.ncbi.nlm.nih.gov/pubmed/21681854 publication])
    14 * eXtensible Genotype and Phenotype database (XGAP) ([wiki:XgapStart project], [http://www.ncbi.nlm.nih.gov/pubmed/20214801 publication])
    15 * Design of Genetical Genomics Experiments (designGG)] ([http://gbic.biol.rug.nl/designGG project], [http://www.biomedcentral.com/1471-2105/10/188 publication])
    16 * BBMRI-NL biobank catalague ([http://www.phenoflow.org/wiki/BiobankCatalog project])
    17 * MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ([http://magetab-om.sourceforge.net/ project], [http://wwwdev.ebi.ac.uk/microarray-srv/magetab demo])
    18 * Pheno-OM Phenotype observation model ([wiki:PhenoFlow project], [http://wwwdev.ebi.ac.uk/microarray-srv/pheno demo])
    19 * Mouse Resource Browser (MRB) project] ([http://bioit.fleming.gr/mrb/ project], [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911845 publication])
    20 * MOLGENIS as data wrapper in Taverna ([http://www.ncbi.nlm.nih.gov/pubmed/19112082 publication])
    21 * Animal observation database (AnimalDB) ([http://www.animaldb.org project])
    22 * Nordic GWAS control database ([http://www.nordicdb.org project], [http://www.nature.com/ejhg/journal/v18/n12/full/ejhg2010112a.html publication])
    23 * GWAS Central curation tool ([http://www.gen2phen.org/content/gwas-central-curation-tool-solving-bioinformatics-challenges-complex-data-management-molgenis project])
    24 * Finnish disease database (FINDIS) ([http://www.schemalet.org/mediawiki/index.php/FINDIS:Database project])
    25 * Bacterial microarrays database (MOLGEN-IS) ([http://www.ncbi.nlm.nih.gov/pubmed/15059831 publication])
    26 * Human Metabolic Pathway Database ([http://vm7.target.rug.nl/humanpathwaydb/ project], [http://www.biomedcentral.com/1752-0509/5/165/abstract publication])
     9 * xQTL Workbench for multi-level QTL mapping ([wiki:xQTL project], [http://dx.doi.org/10.1093/bioinformatics/bts049 publication])
     10 * Dystrophic Epidermolysis Bullosa (deb-central) mutation database ([http://www.deb-central.org project], [http://www.ncbi.nlm.nih.gov/pubmed/21681854 publication])
     11 * eXtensible Genotype and Phenotype database (XGAP) ([wiki:XgapStart project], [http://www.ncbi.nlm.nih.gov/pubmed/20214801 publication])
     12 * Design of Genetical Genomics Experiments (designGG)] ([http://gbic.biol.rug.nl/designGG project], [http://www.biomedcentral.com/1471-2105/10/188 publication])
     13 * BBMRI-NL biobank catalogue ([http://www.phenoflow.org/wiki/BiobankCatalog project])
     14 * MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ([http://magetab-om.sourceforge.net/ project], [http://wwwdev.ebi.ac.uk/microarray-srv/magetab demo])
     15 * Pheno-OM Phenotype observation model ([wiki:PhenoFlow project], [http://wwwdev.ebi.ac.uk/microarray-srv/pheno demo])
     16 * Mouse Resource Browser (MRB) project] ([http://bioit.fleming.gr/mrb/ project], [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911845 publication])
     17 * MOLGENIS as data wrapper in Taverna ([http://www.ncbi.nlm.nih.gov/pubmed/19112082 publication])
     18 * Animal observation database (AnimalDB) ([http://www.animaldb.org project])
     19 * Nordic GWAS control database ([http://www.nordicdb.org project], [http://www.nature.com/ejhg/journal/v18/n12/full/ejhg2010112a.html publication])
     20 * GWAS Central curation tool ([http://www.gen2phen.org/content/gwas-central-curation-tool-solving-bioinformatics-challenges-complex-data-management-molgenis project])
     21 * Finnish disease database (FINDIS) ([http://www.schemalet.org/mediawiki/index.php/FINDIS:Database project])
     22 * Bacterial microarrays database (MOLGEN-IS) ([http://www.ncbi.nlm.nih.gov/pubmed/15059831 publication])
     23 * Human Metabolic Pathway Database ([http://vm7.target.rug.nl/humanpathwaydb/ project], [http://www.biomedcentral.com/1752-0509/5/165/abstract publication])
    2724
    28 If you think your project should be listed (differently) please [mailto:m.a.swertz@rug.nl let us know]     
     25If you think your project should be listed (differently) please [mailto:m.a.swertz@rug.nl let us know]
     26
    2927= Developing your own =
    30 
    3128Generate [wiki:MolgenisGuide generate your own] in three steps:
    3229
    … …  
    3633
    3734See
     35
    3836 * [http://www.molgenis.org/attachment/wiki/WikiStart/20111018%20MOLGENIS%204%20tutorial.pdf MOLGENIS tutorial]
    39  * MolgenisGuide -- How to generate your own MOLGENIS 
     37 * MolgenisGuide -- How to generate your own MOLGENIS
    4038 * MolgenisApps -- Our app suite [in development]
    4139 * MolgenisFaq -- Frequently asked questions about MOLGENIS and its use