News

Enlighten Your Research Global Award: Virtual Machine Images for Life Science Research

Denver (USA) 18 November 2013 – One of the four prestigious "Enlighten Your Research Global" has been awarded to an idea developed by an ELIXIR working group for the sharing of virtual machines over research and education networks.

• Posted: 10 years ago (Updated: 10 years ago)
• Author: george
• Categories: MCF
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MOLGENIS/compute at IWSG-2013

​MOLGENIS/compute was presented at 5th International Workshop on Science Gateways, IWSG 2013, Zurich, Switzerland

• Posted: 12 years ago
• Author: george
• Categories: MCF
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Visual Analytics for Bio-Workflows at NBIC-2013

​Towards visual analytics of bio-workflows presentation was given at the NBIC-2013 conference, Lunteren, Netherlands

• Posted: 12 years ago (Updated: 12 years ago)
• Author: george
• Categories: MCF
• Comments (0)

Visual Analytics for Bio-Workflows at BIOINFORMATICS-2013

"Visualization of bioinformatics workflows for ease of understanding and design activities" paper will be presented at the BIOSTEC-BIOINFORMATICS-2013 conference, on February 11th, 2013, Bercelona, Spain. [​http://www.molgenis.org/raw-attachment/blog ...

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• Posted: 12 years ago (Updated: 12 years ago)
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute workshop at BioAssist meeting

MOLGENIS/compute workshop took place at the NBIC Bio Assist meeting, in Utrect, Oct.12, 2012

• Posted: 12 years ago (Updated: 12 years ago)
• Author: george
• Categories: MCF
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Welcome to MOLGENIS

MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Using the software

MOLGENIS applications:

• xQTL Workbench for multi-level QTL mapping (project)
• Dystrophic Epidermolysis Bullosa (deb-central) mutation database (​project, ​publication)
• eXtensible Genotype and Phenotype database (XGAP) (project, ​publication)
• Design of Genetical Genomics Experiments (designGG)] (​project, ​publication)
• BBMRI-NL biobank catalague (​project)
• MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] (​project, ​demo)
• Pheno-OM Phenotype observation model (project, ​demo)
• Mouse Resource Browser (MRB) project] (​project, ​publication)
• MOLGENIS as data wrapper in Taverna (​publication)
• Animal observation database (AnimalDB) (​project)
• Nordic GWAS control database (​project, ​publication)
• GWAS Central curation tool (​project)
• Finnish disease database (FINDIS) (​project)
• Bacterial microarrays database (MOLGEN-IS) (​publication)
• Human Metabolic Pathway Database (​project, ​publication)

If you think your project should be listed (differently) please let us know

Developing your own

Generate generate your own in three steps:

1. Model what you want for your experiment in a simple XML file ​example db, ​example ui
2. Run the MOLGENIS generator
3. Use your web application ​example.

See

• ​MOLGENIS tutorial
• MolgenisGuide -- How to generate your own MOLGENIS
• MolgenisApps -- Our app suite [in development]
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisGoogleGroup -- Join our Googlegroup mail forum for all things around MOLGENIS

Partners

The MOLGENIS project is supported by the University Medical Center Groningen ​UMCG, Groningen Bioinformatics Center ​GBIC, European Bioinformatics Institute ​EBI and the Netherlands Bioinformatics Center ​NBIC.