| | 1 | [[BlogList(recent=5, max_size=250, format=float, heading=News)]] |
| | 2 | = Welcome to the Genomics Coordination Centre = |
| | 3 | The center for genomics databases and analysis tools, courses and workshops. See AboutGcc |
| | 4 | == Genetical Genomics == |
| | 5 | * XgapMolgenis - eXtensible Genotype And Phenotype database for GWL and GWA studies |
| | 6 | * RqtlPackage - R package for the analysis of QTL experiments |
| | 7 | * DesignGg - tool for the experimental design of QTL experiments having multiple factors. |
| | 8 | * GwasPipeline - pipeline for genotype quality control and standard analysis |
| | 9 | * GwasPortal - Research platform for LifeLines genetics research |
| | 10 | * GenomicIslandsAnalysis - Software belonging to the NBIC BRS project "A quantitative account of genomic island acquisitions in prokaryotes" |
| | 11 | |
| | 12 | == Sequencing == |
| | 13 | * SequencingTools - lists tools and manuals we currently have available for Sequencing. |
| | 14 | * SequencingMolgenis - laboratory information system (LIMS) for Illumina sequencing |
| | 15 | == Mass Spectrometry == |
| | 16 | * DataAnalysisFramework - Data Analysis Framework, aka PipelineMolgenis |
| | 17 | * [wiki:PeakML] format - file format for mass spectrometry data |
| | 18 | * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics |
| | 19 | * CilairMolgenis- Database and analysis suite for CILAIR proteomics experiments |
| | 20 | == Biobanking == |
| | 21 | * [animaldb:WikiStart AnimalDB] - for animal observations |
| | 22 | * PhenotypeMolgenis - file format and database for phenotypic data on human and model organisms |
| | 23 | * LocusSpecificMolgenis - A locus specific database for the Col7a1 gene mutations of which cause dystrophic epidermolysis bullosa |
| | 24 | * GenotypeMolgenis - Genetical information management system (aka GIMS), for the genetics laboratory |
| | 25 | * MicroarrayMolgenis - database for microarray gene expression experiments based on the [http://www.mged.org/mage-tab MAGE-TAB] standard |
| | 26 | |
| | 27 | = Internships = |
| | 28 | Bachelor- and masterstudents are invited to apply for an internship at the GCC. An overview of suitable projects is available at the GccInternships page. |
| | 29 | = Intranet = |
| | 30 | * GccMeetings - Notes on our weekly work meetings |
| | 31 | * GccTicketList - Lists assigned and open tickets over all GCC tracs |
| | 32 | * GccProjects - Matrix of ongoing projects and their relationships |
| | 33 | * GccManuals - How to use the software and servers that we have |
| | 34 | * GccLinks - Hyperlinks to papers and websites of interest |
| | 35 | * GccTeam - Members of the group |
| | 36 | * GccCalendar - Meetings etc |
| | 37 | * GccGroup - Our mailing list and group discussion site |
| | 38 | * GccServers - How to connect to our servers |
| | 39 | * GccIfolder - How to connect to our iFolder |
| | 40 | * GccLogs - Logbooks of GCC people |
| | 41 | |
| | 42 | = BioAssist = |
| | 43 | * BioAssist - Meetings |
| | 44 | |
| | 45 | |
| | 46 | |
| | 47 | Please edit ;-) |
