| | 1 | [[TOC()]] |
| | 2 | = XGAP plugins = |
| | 3 | New tools can be added as 'plugins' to the XGAP UI as described in http://www.molgenis.org/wiki/MolgenisPlugin. |
| | 4 | This typically involves a statement of the form |
| | 5 | {{{ |
| | 6 | #!xml |
| | 7 | <plugin name="MyPlugin" type="java.package.MyPluginCode.java"/> |
| | 8 | }}} |
| | 9 | |
| | 10 | XGAP already has a growing catalog of such plugins. Below these plugins and their status (use, development, planned) are reported. One can find the code plugins in the folder handwritten/java/plugins of XGAP: |
| | 11 | |
| | 12 | == DataWizard - to import/export XGAP data files(in use) == |
| | 13 | |
| | 14 | [[Image(wizard-small.png)]] |
| | 15 | |
| | 16 | == !MatrixViewer - to view !DataElement objects in the form of a matrix (in use) == |
| | 17 | |
| | 18 | [[Image(matrixview-small.png)]] |
| | 19 | |
| | 20 | == !RqtlCluster - to run R/QTL calculations on a university computer cluster (in use) == |
| | 21 | Installation of this plugin requires access to a PBS computing cluster. |
| | 22 | |
| | 23 | [[Image(cluster-small.png)]] |
| | 24 | |
| | 25 | == DataArchiver - to import/export xgap investigations as zip files (in use) == |
| | 26 | |
| | 27 | [[Image(archiver-small.png)]] |
| | 28 | |
| | 29 | == !OntologyBrowser - to browse for ontology terms (in use) == |
| | 30 | Note: performance is still slow as it is based an remote version of the [http://www.ebi.ac.uk/ontology-lookup/ EBI Ontology Lookup Service] |
| | 31 | |
| | 32 | [[Image(olsbrowser-small.png)]] |
| | 33 | |
| | 34 | == !InvestigationOverview - report of all annotations and data in one investigation (in use) == |
| | 35 | |
| | 36 | [[Image(overview-small.png)]] |
| | 37 | |
| | 38 | == !MatrixRemove - to remove a whole matrix (in use) == |
| | 39 | |
| | 40 | [[Image(remove-small.png)]] |
| | 41 | |
| | 42 | == !MatrixRplot - minimal visualisations of data matrices (in use) == |
| | 43 | |
| | 44 | [[Image(rplot-small.png)]] |
| | 45 | |
| | 46 | == KEGGConverter - to convert identifiers using KEGG orthologs (in use) == |
| | 47 | |
| | 48 | [[Image(kegg-small.png)]] |
