Changes between Initial Version and Version 1 of XgapPluginsAvailable


Ignore:
Timestamp:
2010-10-01T23:38:13+02:00 (14 years ago)
Author:
trac
Comment:

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  • XgapPluginsAvailable

    v1 v1  
     1[[TOC()]]
     2= XGAP plugins =
     3New tools can be added as 'plugins' to the XGAP UI as described in http://www.molgenis.org/wiki/MolgenisPlugin.
     4This typically involves a statement of the form
     5{{{
     6#!xml
     7<plugin name="MyPlugin" type="java.package.MyPluginCode.java"/>
     8}}}
     9
     10XGAP already has a growing catalog of such plugins. Below these plugins and their status (use, development, planned) are reported. One can find the code plugins in the folder handwritten/java/plugins of XGAP:
     11
     12== DataWizard - to import/export XGAP data files(in use) ==
     13
     14[[Image(wizard-small.png)]]
     15
     16== !MatrixViewer - to view !DataElement objects in the form of a matrix (in use) ==
     17
     18[[Image(matrixview-small.png)]]
     19
     20== !RqtlCluster - to run R/QTL calculations on a university computer cluster (in use) ==
     21Installation of this plugin requires access to a PBS computing cluster.
     22
     23[[Image(cluster-small.png)]]
     24
     25== DataArchiver - to import/export xgap investigations as zip files (in use) ==
     26
     27[[Image(archiver-small.png)]]
     28
     29== !OntologyBrowser - to browse for ontology terms (in use) ==
     30Note: performance is still slow as it is based an remote version of the [http://www.ebi.ac.uk/ontology-lookup/ EBI Ontology Lookup Service]
     31
     32[[Image(olsbrowser-small.png)]]
     33
     34== !InvestigationOverview - report of all annotations and data in one investigation (in use) ==
     35
     36[[Image(overview-small.png)]]
     37
     38== !MatrixRemove - to remove a whole matrix (in use) ==
     39
     40[[Image(remove-small.png)]]
     41
     42== !MatrixRplot - minimal visualisations of data matrices (in use) ==
     43
     44[[Image(rplot-small.png)]]
     45
     46== KEGGConverter - to convert identifiers using KEGG orthologs (in use) ==
     47
     48[[Image(kegg-small.png)]]