Changes between Version 5 and Version 6 of bbmri_subtask3


Ignore:
Timestamp:
2010-12-07T13:57:25+01:00 (14 years ago)
Author:
antonak
Comment:

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  • bbmri_subtask3

    v5 v6  
    1 Start d2r on molgenis n3 mapping :
    2 
     1= Start d2r on molgenis n3 mapping on molgenis4phenotype : =
    32 * In local installation d2r-server -p 2020 molgenis.n3
    43 * there are some problems about :
     
    87     * at d2r.server.startServer(!server.java:86 )
    98     * at d2r.server.main(!server.java:57 )
    10    * The problem above is a inconsistency of the model that lives in the directory where d2r server is run and the database schema. 
    11      * Solved by steps: 
     9   * The problem above is a inconsistency of the model that lives in the directory where d2r server is run and the database schema.
     10     * Solved by steps:
    1211       1. generate in molgenis .
    1312       1. update database
    14        1. run 
    15        1. copy generated .n3 file in d2r running directory 
     13       1. run
     14       1. copy generated .n3 file in d2r running directory
    1615
    1716  TODO :
     
    1918 * Next steps : check which DB it makes use . This digital identity seems to be in a really old DB .(DONE)
    2019 * after taking NULL EXCEPTION off the command line run of D2R..(DONE - see steps above)
    21  * check the SPARQL interface if is running om localhost/8080 http://localhost:2020/snorql/ (DONE  check at !http://localhost:2020/snorql/) 
     20 * check the SPARQL interface if is running om localhost/8080 http://localhost:2020/snorql/ (DONE  check at !http://localhost:2020/snorql/)
    2221
    2322DONE :
    2423
    25   23     !d2rq:jdbcDSN  "jdbc:mysql://127.0.0.1/addressbook "; this is actually used . So copy another molgenis n3 mapping from a valid database. The schemes seems to be incompatible .
     24  23     !d2rq:jdbcDSN   "jdbc:mysql://127.0.0.1/addressbook  "; this is actually used . So copy another molgenis n3 mapping from a valid database. The schemes seems to be incompatible .
     25 
     26 
     27= '''Start d2r on molgenis n3 mapping on molgenisGCC project :'''
     28
     29mv molgenis-rdf-mapping.n3 molgenis-rdf-mapping_gcc.n3 
     30
     31!Despoina-Antonakakis-MacBook-Pro:d2r-server-0.7 despoina$ d2r-server molgenis-rdf-mapping_gcc.n3 
     32
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