Changes between Version 2 and Version 3 of generateArtificialGwas

Timestamp:

2012-09-06T13:37:23+02:00 (12 years ago)

Author:

Patrick

Comment:

--

generateArtificialGwas

@@ -19 +19 @@
 hapgen2 -h hapmap_r24_b36_fwd.consensus.qc.poly.chr22_ceu.phased -l chr22.ceu.r24.legend -m genetic_map_chr22_CEU_b36.txt -o test -dl 14431347 0 2 10 -n 2000 2000
 }}}
+== Merging case and control ==
+{{{
+gtool -M --g test.cases.gen test.controls.gen --s test.cases.sample test.controls.sample --og test.gen --os test.samples
+}}}
+== Convert to ped/map ==
+{{{
+gtool -G --g test.gen --s test.samples --ped test.ped --map test.map --phenotype pheno
+}}}