wiki:xQTLAdministratorDatabase

Version 2 (modified by jvelde, 13 years ago) (diff)

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TracNav(xQTL)?

xQTL workbench - Manage database and storage

  • go to Settings -> Database status

here you can load the example data, or reset to database to its empty form. empty means

  • the tables definitions are loaded in the database
  • users admin and anonymous are present
  • usergroups biologist and bioinformatician are present
  • permissions as defined in the gui.xml are loaded: this means which groups can see which screens and are allowed to write which entities

loading the example data (first set a storage path in File storage): now you have

  • example users 'bio-user' and 'bioinfo-user'
  • additional permissions loaded to give these users functional access to the database
  • example investigation, including
    • annotations for individual, chromosome, etc
    • geno/pheno dataset, tagged for QTL
    • Rqtl analysis ready to be executed
  • go to Settings -> File storage

set a path and press Validate in order to get a location where xQTL can store files