Changes between Version 24 and Version 25 of xQTLAdministratorInstall


Ignore:
Timestamp:
2011-09-08T11:36:59+02:00 (13 years ago)
Author:
jvelde
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • xQTLAdministratorInstall

    v24 v25  
    33= [wiki:xQTL xQTL workbench] - Installation and maintanance =
    44
    5 {{{
    6 #!html
    7 <h2 style="color: blue">
    8  Latest release <font color="green"><b>WORKING</b></font>
    9 </h2>
    10 }}}
     5xQTL can be ran on any machine that has Java installed. To perform an installation, follow these steps.
    116
    127You will need: [http://ant.apache.org/ Ant], [http://subversion.apache.org/ Subversion], [http://www.java.com/ Java].[[BR]]
    138[[BR]]
    14 Create a directory somewhere to work in, e.g. `/Users/harry/xqtl`, and `cd` to there. Run these commands:[[BR]]
     9Create a directory somewhere to work in, e.g. `/Users/johndoe/xqtl`, and `cd` to there. Run these commands:[[BR]]
    1510[[BR]]
    1611`svn co http://www.molgenis.org/svn/molgenis/trunk/ molgenis`[[BR]]
    … …  
    1914[[BR]]
    2015By the way, Ant can be made faster by giving it more memory. Use e.g. `export ANT_OPTS=-Xmx512m`[[BR]]
    21 The application is now running at: `http://localhost:8080/molgenis_apps`[[BR]]
     16The application is now running at: `http://localhost:8080/xqtl`[[BR]]
    2217Then login with user/pw: `admin` / `admin`[[BR]]
    2318[[BR]]
    2419You are now done setting up :)[[BR]]PLEASE NOTICE: For subsequent starts of the application, use:[[BR]][[BR]]
    2520`ant -f molgenis_apps/xqtl_dev.xml`[[BR]][[BR]]
    26 To avoid regeneration and recompilation. It calls the default target '`run`'. Things you can do next are..
     21To avoid regeneration and recompilation. It calls the default target '`run`'. Things you should do next are..
    2722[[BR]]
    2823* Change the admin password[[BR]]
    29 * Make users and put them in the group 'biologist' or 'bioinformatician'[[BR]]
    30 * Import new data[[BR]]
    31 * Explore existing data[[BR]]
    32 * Install R packages and run QTL mapping locally[[BR]]
    33 * Add a new analysis R script[[BR]]
    34 * Run an analysis on the cluster[[BR]]
    35 * etcetera!
     24* Load the example data/users. Or let users register themselves and put them in the group 'biologist' or 'bioinformatician'. You can even add users manually.[[BR]]
     25* Install R so the ''Rplot'' plugin will work. And install the R packages to be able to run QTL mapping locally.[[BR]]
     26* Run a default analysis to see that everything is setup correctly.
    3627
    37 {{{
    38 #!html
    39 <h2 style="color: blue">
    40  Development & Deployment
    41 </h2>
    42 }}}
     28=== Development and deployment ===
    4329
    4430''Go into the application source for convenient access to the Ant scripts:''[[BR]]