Changes between Version 25 and Version 26 of xQTLAdministratorInstall

Timestamp:

2011-09-08T12:06:54+02:00 (13 years ago)

Author:

jvelde

Comment:

--

xQTLAdministratorInstall

@@ -3 +3 @@
 = [wiki:xQTL xQTL workbench] - Installation and maintanance =
 
-xQTL can be ran on any machine that has Java installed. To perform an installation, follow these steps.
+xQTL can be installed, ran and updated on any machine that has Java installed. For safety, we recommend you perform these action as a regular UNIX user and not as root.
+
+=== Installation ===
 
 You will need: [http://ant.apache.org/ Ant], [http://subversion.apache.org/ Subversion], [http://www.java.com/ Java].[[BR]]
@@ -25 +27 @@
 * Install R so the ''Rplot'' plugin will work. And install the R packages to be able to run QTL mapping locally.[[BR]]
 * Run a default analysis to see that everything is setup correctly.
+
+=== Updating ===
+
+Consider creating an SH script to do the updating for you. For example, this script kills/starts the application on port 9000 and assumes you have used the above installation/checkour dirs:[[BR]]
+{{{#!html
+<font style="font-family: Courier">
+kill -9 &#96;lsof -i :9000 -t&#96;<br>
+cd ~/xqtl<br>
+svn update molgenis molgenis_apps<br>
+cd molgenis_apps<br>
+ant -f xqtl_dev.xml clean_make<br>
+nohup ant -f xqtl_dev.xml runOn -Dport=9000 &<br>
+</font>
+}}}
 
 === Development and deployment ===