Changes between Version 31 and Version 32 of xQTLAdministratorInstall

Timestamp:

2011-09-30T09:45:44+02:00 (13 years ago)

Author:

jvelde

Comment:

--

xQTLAdministratorInstall

@@ -41 +41 @@
 }}}
 
+At the moment, `clean_make` will drop your entire database, so be careful! The alternative[[BR]]
+`ant -f xqtl_dev.xml recompile`[[BR]]
+Does a 'soft' update: it only updates the code and recompiles this without touching the database. However, some changes require regeneration and (implicitly) a fresh database because of potential datamodel changes.
+
+
 === Development and deployment ===
 
@@ -70 +75 @@
 [http://www.molgenis.org/svn/molgenis_apps/trunk/xqtl_dev.xml development], [http://www.molgenis.org/svn/molgenis_apps/trunk/xqtl_selenium.xml webtesting], [http://www.molgenis.org/svn/molgenis_apps/trunk/xqtl_jar.xml jarbuilding].
 
-
+=== Download source into development IDE (OSX, UNIX, Windows): ===
+1. Install the [http://www.eclipse.org Eclipse] IDE[[BR]]
+2. Install [http://subclipse.tigris.org/update_1.6.x Subclipse] for Eclipse[[BR]]
+3. Install JBoss tools [http://download.jboss.org/jbosstools/updates/development/indigo/ Freemarker] for Eclipse[[BR]]
+4. Add SVN repository http://ww.molgenis.org/svn [[BR]]
+5. Checkout `/molgenis/trunk`[[BR]]
+6. Checkout `/molgenis_apps/trunk`[[BR]]
+7. Run `apps/xgap/org/molgenis/xgap/xqtlworkbench/XqtlGenerate.java`[[BR]]
+8. Refresh and start `modules/webserver/boot/RunStandalone.java`
 
 [[BR]][[BR]][[BR]]
-= OLDER STUFF =
+= Other stuff =
 [[BR]]
 Older wiki @ http://www.molgenis.org/wiki/xQTLDemo
@@ -85 +98 @@
 `ant -f molgenis_apps/xqtl_dev.xml make_run`[[BR]]
 [[BR]]
-Note: If you didn't start the application as root, you may not have the rights to use the default storage path. In that case, set it to somewhere inside your home folder and proceed as usual. E.g. use `home/harry/xqtl/`
-[[BR]][[BR]][[BR]][[BR]][[BR]]
+Note: If you didn't start the application as root (which you shouldn't), you may not have the rights to use the default storage path. In that case, set it to somewhere inside your home folder and proceed as usual. E.g. use `home/harry/xqtl/`
+[[BR]][[BR]]
 
-=== Download and run (OSX, UNIX, Windows): ===
-[Todo: link to ZIP file with working application]
 
-=== Download source, compile and run (OSX/UNIX): ===
-Required: [http://ant.apache.org/ Ant], [http://subversion.apache.org/ Subversion], [http://www.java.com/ Java]. Pick either the ''Stable'' or ''Unstable'' checkout.
-
-''Stable''
-
-`svn co TODO`[[BR]]
-`svn co TODO`
-
-''Unstable''
-
-`svn co -r 8238 http://www.molgenis.org/svn/molgenis/branches/nobinlibs/`[[BR]]
-`svn co -r 8239 http://www.molgenis.org/svn/molgenis_apps/trunk/`
-
-`mv nobinlibs molgenis`[[BR]]
-`mv trunk molgenis_apps`[[BR]]
-`ant -f molgenis/standalone.xml`[[BR]]
-`mv molgenis/dist/molgenis-4.0.0.jar molgenis_apps/dist/`[[BR]]
-`ant -f molgenis_apps/standalone.xml generate`[[BR]]
-`ant -f molgenis_apps/standalone.xml`[[BR]]
-`cd molgenis_apps/dist/`[[BR]]
-`java -jar Application.jar`
-
-__If ant fails with a heapspace error, use:__[[BR]]`export ANT_OPTS=-Xmx512m`
-
-Application running at: http://localhost:8080/molgenis_apps/ [[BR]]Setup database using: http://localhost:8080/molgenis_apps/resetdatabase_4EE1D7A3E73C504183B69F7D20108853
-
-''APP IS BROKEN AT THIS POINT:''
-
-''start running create_tables.sql[[BR]]java.lang.!NullPointerException[[BR]]    at java.io.Reader.<init>(!Reader.java:61) [[BR]]    at java.io.!InputStreamReader.<init>(!InputStreamReader.java:55) [[BR]]    at plugins.emptydb.emptyDatabase.empty(Unknown Source)''
-
-=== Download source into development IDE (OSX, UNIX, Windows): ===
-1. Install the [http://www.eclipse.org Eclipse] IDE[[BR]]
-2. Install [http://subclipse.tigris.org/update_1.6.x Subclipse] for Eclipse[[BR]]
-3. Install JBoss tools [http://download.jboss.org/jbosstools/updates/development/indigo/ Freemarker] for Eclipse[[BR]]
-4. Add SVN repository http://ww.molgenis.org/svn [[BR]]
-5. Checkout `/molgenis/trunk`[[BR]]
-6. Checkout `/molgenis_apps/trunk`