xQTL workbench

Download and run (OSX, UNIX, Windows):

[Todo: link to ZIP file with working application Todo: link to ZIP file with working application]

Download source, compile and run (OSX/UNIX):

Required: ​Ant, ​Subversion, ​Java. Pick either the Stable or Unstable checkout.

Stable

svn co TODOsvn co TODO

Unstable

svn co -r 8238 http://www.molgenis.org/svn/molgenis/branches/nobinlibs/svn co -r 8239 http://www.molgenis.org/svn/molgenis_apps/trunk/

mv nobinlibs molgenismv trunk molgenis_appsant -f molgenis/standalone.xmlmv molgenis/dist/molgenis-4.0.0.jar molgenis_apps/dist/ant -f molgenis_apps/standalone.xml generateant -f molgenis_apps/standalone.xmlcd molgenis_apps/dist/java -jar Application.jar

If ant fails with a heapspace error, use:
export ANT_OPTS=-Xmx512m

Application running at: ​http://localhost:8080/molgenis_apps/
Setup database using: ​http://localhost:8080/molgenis_apps/resetdatabase_4EE1D7A3E73C504183B69F7D20108853

APP IS BROKEN AT THIS POINT:

start running create_tables.sql
java.lang.NullPointerException
    at java.io.Reader.<init>(Reader.java:61)
    at java.io.InputStreamReader.<init>(InputStreamReader.java:55)
    at plugins.emptydb.emptyDatabase.empty(Unknown Source)

Download source into development IDE (OSX, UNIX, Windows):

1. Install the [http://www.eclipse.org Eclipse] IDE
   2. Install [http://subclipse.tigris.org/update_1.6.x Subclipse] for Eclipse
   3. Install JBoss tools [http://download.jboss.org/jbosstools/updates/development/indigo/ Freemarker] for Eclipse
   4. Add SVN repository 'http://ww.molgenis.org/svn'
   5. Checkout /molgenis/trunk
   6. Checkout /molgenis_apps/trunk