Changes between Initial Version and Version 1 of xQTLBioinformaticianGalaxy


Ignore:
Timestamp:
2011-09-09T14:48:31+02:00 (14 years ago)
Author:
jvelde
Comment:

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  • xQTLBioinformaticianGalaxy

    v1 v1  
     1[[TracNav(xQTL)]]
     2
     3= [wiki:xQTL xQTL workbench] - Galaxy and Cloud =
     4
     5There are many alternative ways to connect or deploy xQTL in powerful environments such as web services, the C programming language, Galaxy, or the EC3 cloud. Here we will highlight some of these possibilities.
     6
     7=== xQTL as a Galaxy datasource ===
     8
     9To connext Galaxy to xQTL, please follow the generic tutorial for Molgenis applications. It can be found [MolgenisAsGalaxyDatasource here].
     10
     11=== Running in Cloud EC3 ===
     12
     13Vagrant Debian squeeze installation for cloud deployment:
     14
     15Links:
     16
     17* [http://vagrantup.com/ Vagrant][[BR]]
     18* [http://mathie-vagrant-boxes.s3.amazonaws.com/debian_squeeze_32.box Debian Squeeze][[BR]]
     19* [http://woss.name/2011/02/07/vagrant-base-bo-for-debian-squeeze/ Run Debian Squeeze using Vagrant]
     20
     21Script:
     22
     23`sudo su`[[BR]]
     24`apt-get update`[[BR]]
     25`apt-get install ant subversion default-jdk -y`[[BR]]
     26`mkdir xqtlwb`[[BR]]
     27`cd xqtlwb`[[BR]]
     28`svn co http://www.molgenis.org/svn/molgenis/trunk/ molgenis`[[BR]]
     29`svn co http://www.molgenis.org/svn/molgenis_apps/trunk/ molgenis_apps`[[BR]]
     30`ant -f molgenis_apps/xqtl_dev.xml make_run`[[BR]]