TracNav(xQTL)?

xQTL workbench - Galaxy and Cloud

There are many alternative ways to connect or deploy xQTL in powerful environments such as web services, the C programming language, Galaxy, or the EC3 cloud. Here we will highlight some of these possibilities.

xQTL as a Galaxy datasource

To connext Galaxy to xQTL, please follow the generic tutorial for Molgenis applications. It can be found here.

Running in Cloud EC3

Vagrant Debian squeeze installation for cloud deployment:

Links:

• ​Vagrant
  
• ​Debian Squeeze
  
• ​Run Debian Squeeze using Vagrant

So this boils down to:

UNTESTED

• Install Vagrant

gem install vagrant

• Download and start Debian Squeeze in SSH mode using Vagrant

vagrant box add debian_squeeze_32 http://mathie-vagrant-boxes.s3.amazonaws.com/debian_squeeze_32.box
mkdir squeeze_demo
cd squeeze_demo
vagrant init debian_squeeze_32

• Forward port and/or IP ?

Open Vagrantfile with your favourite text editor. Change these lines: # config.vm.network "33.33.33.10" # config.vm.forward_port "http", 80, 8080

• Start the Vagrant box

vagrant up
vagrant ssh

• Install dependencies

apt-get install ant
apt-get install subversion
apt-get install default-jdk

Install and start xQTL workbench sudo su
apt-get update
apt-get install ant subversion default-jdk -y
mkdir xqtlwb
cd xqtlwb
svn co http://www.molgenis.org/svn/molgenis/trunk/ molgenis
svn co http://www.molgenis.org/svn/molgenis_apps/trunk/ molgenis_apps
ant -f molgenis_apps/xqtl_dev.xml make_run