Changes between Version 7 and Version 8 of xQTLBioinformaticianScript


Ignore:
Timestamp:
2011-09-13T19:31:57+02:00 (13 years ago)
Author:
jvelde
Comment:

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  • xQTLBioinformaticianScript

    v7 v8  
    109109* Upload [http://pngu.mgh.harvard.edu/~purcell/plink/hapmap1.zip example data] in your database. (just '''hapmap1.map''' and '''hapmap1.ped''')
    110110* Create a new ''Analysis'' with target function 'PLINK'.
    111 * Add an R script with function 'run_PLINK'. Let the script download the MAP and PED example files.
     111* Add an R script with function 'run_PLINK'. Let the script download the MAP and PED example files. (use servlet `/downloadfile`)
    112112* Run Plink system call inside R: `plink --noweb --file hapmap1 --assoc --out results`[[BR]]
    113 * Upload '''results.assoc''' back in database.
     113* Upload '''results.assoc''' back in database. (use servlet `/uploadfile`)