Changes between Version 8 and Version 9 of xQTLBiologistBrowse


Ignore:
Timestamp:
2012-01-30T15:07:55+01:00 (12 years ago)
Author:
jvelde
Comment:

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  • xQTLBiologistBrowse

    v8 v9  
    77=== Overview ===
    88
    9 * The first tab named ''Overview'' will present you with a summary view of all entries in this investigation.
     9* The first tab named ''Investigation overview'' will present you with a summary view of all entries in this investigation.
    1010* You can change investigations with the arrowed buttons at the top.
    11 * Clicking on a type of data will take you there. This is a shorthand: you can always browse to all datatypes using the tabs ''View data'', ''View annotations'', and ''View files''.
     11* Clicking on a type of data will take you there. This is a shorthand: you can always browse to all datatypes using the tabs ''Data matrices'' and ''Annotations''.
    1212* Similarly, the ''Add'' button is a shorthand to be taken to the tabs of this data category (data, annotations or file) where you can start adding data with the ''Add new record'' button.
    1313* The default view will display 4 entries for each type: use ''Show all'' to expand.
    … …  
    1616
    1717* This tab allows you to add, view and remove data matrices. These are rectangular pieces of (raw) experimental data accompanied by row- and column names.
    18 * Matrices themselves are annoted with the 'Data' entries, while their row- and column entries are annotated as separate (strong) datatypes found in the ''View annotations'' tab.
     18* Matrices themselves are annoted with the 'Data' entries, while their row- and column entries are annotated as separate (strong) datatypes found in the ''Annotations'' tab.
    1919* There are a number of plugins that will help you deal with matrices:
    20  * Manager = Uploads data and views the numerical/textual data.
    21  * Heatmap = View numerical values as a customizable heatmap.
    22  * Rplot = Create graphical plots using R.
    23  * Inspector = Check whether annotations are missing.
    24  * Delete storage = Delete source data linked to this Data entry.
     20 * View = Uploads data and views the numerical/textual data.
     21 * Inspect = Check whether annotations are missing.
     22 * Delete = Delete source data linked to this Data entry.
    2523
    2624=== View annotations ===
    … …  
    3432=== View files ===
    3533
    36 * Here you can add files in their original form to the database.
     34* Found under ''Upload data'', here you can add files in their original form to the database.
    3735* Specify the name and extension of the file in a standard record. Try making a file named 'test' with extension 'txt'. Save the record.
    3836* You will now see an upload window. Files can be added by selecting them from your filesystem, or by typing in the text area. Try typing 'this is my file', and press the lower-right ''Upload'' button.