| | 7 | Please note that many aspects of running an analysis are already outlined in [wiki:xQTLBiologistRun], so here we will stick with a specific case for the tutorial data. |
| | 8 | |
| | 9 | In step 1: |
| | 10 | * Fill in a nice output name, e.g. 'yeast_qtl'. |
| | 11 | * Leave ''Select the analysis'' on 'Rqtl_analysis'. |
| | 12 | * Leave the ''amount of divided parts'' on 5, though you can select 2 if the machine you are working on is not very powerful, or 10 if you have a quad- or octocore machine. This is the amount of parallel processes that your analysis will be chopped up into, to reduce the time it needs to complete. (especially on a computer cluster) |
| | 13 | * Click ''Next''. |
| | 14 | |
| | 15 | In step 2: |
| | 16 | * In the dropdown for ''Select input data, genotypes'', select '!ClusterDemo_yeast_geno'. |
| | 17 | * In the dropdown for ''Select input data, phenotypes'', select '!ClusterDemo_yeast_pheno'. |
| | 18 | * Leave all settings under ''Select parameters'' on their defaults. |
| | 19 | * Click ''Start''. |
| | 20 | |
| | 21 | The analysis is now running. If you want automated updates on the progress, select e.g. 5 seconds for ''Refresh page every X seconds'' and click ''Change''. |
| | 22 | |
| | 23 | The parts of your analysis should slowly be turning from orange to yellow (submitted -> queued), to blue (busy calculating / uploading results) to green (done). You can hover over the little cubes to view a more detailed message. When everything is done (all green / 3's displayed) you can continue to the next part of the tutorial. |
