Changes between Version 3 and Version 4 of xQTLTutorialBiologistRunningAnalysis

Timestamp:

2012-02-21T11:35:53+01:00 (13 years ago)

Author:

jvelde

Comment:

--

xQTLTutorialBiologistRunningAnalysis

@@ -7 +7 @@
 Please note that many aspects of running an analysis are already outlined in [wiki:xQTLBiologistRun], so here we will stick with a specific case for the tutorial data.
 
-In step 1:
+== Step 1: Choose analysis ==
+
 * Fill in a nice output name, e.g. 'yeast_qtl'.
 * Leave ''Select the analysis'' on 'Rqtl_analysis'.
@@ -13 +14 @@
 * Click ''Next''.
 
-In step 2:
+== Step 2: Choose parameters ==
 * In the dropdown for ''Select input data, genotypes'', select '!ClusterDemo_yeast_geno'.
 * In the dropdown for ''Select input data, phenotypes'', select '!ClusterDemo_yeast_pheno'.
@@ -21 +22 @@
 The analysis is now running. If you want automated updates on the progress, select e.g. 5 seconds for ''Refresh page every X seconds'' and click ''Change''.
 
+== Step 3: Monitor progress ==
+
 The parts of your analysis should slowly be turning from orange to yellow (submitted -> queued), to blue (busy calculating / uploading results) to green (done). You can hover over the little cubes to view a more detailed message.
 
 When everything is done (all green / 3's displayed), click the link to 'yeast_qtl' in the ''Output'' column. This should take you to the data matrix where the resulting QTL profiles are stored. From here, please continue to the next part of the tutorial.
 
-|| [wiki:xQTLTutorialBiologistInspectingData Previous: Inspecting the uploaded data] || [wiki:xQTLTutorialBiologistBrowsingResults Continue to: Browse and interpret results] ||
+|| [wiki:xQTLTutorialBiologistInspectingData Previous: Inspecting the uploaded data] <-- || --> [wiki:xQTLTutorialBiologistBrowsingResults Continue to: Browse and interpret results] ||