| | 1 | == Stories Yang == |
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| | 3 | || '''Story''' || '''How to demo''' || |
| | 4 | || 1. as a researcher I want to see all QTLs from a specific experiment || (1) user can choose the experiment name, e.g. GxT study, Gld-1 RNAi expression. (2) user can choose mapping method e.g. single marker mapping or full model mapping (3) user can view QTL dot plots: X axis: QTL position; Y axis: gene position; each dot represent QTL || |
| | 5 | || 2. as a researcher I want to see QTLs of some selected genes from a specific experiment || (1) user can paste a list of gene names into text field. (2) user can choose the experiment name, e.g. GxT study, Gld-1 RNAi expression. (3) user can choose mapping method e.g. single marker mapping or full model mapping (4) user can view QTL plots: X axis: marker position; Y axis: QTL; || |
| | 6 | || 3. as a researcher I want to see QTLs of some selected genes from the selected experiments data sets || (1) user can paste a list of gene names into text field. (2) user can choose the experiment names, e.g. GxT study, Gld-1 RNAi expression. (3) user can choose mapping method e.g. single marker mapping or full model mapping (4) user can view QTL plots: X axis: marker position; Y axis: QTL; || |
| | 7 | || 4. as a researcher I want to run "Regenotyper" to detect potential wrongly labeled samples in a selected experiments data set || (1) user can choose the experiment names, e.g. GxT study, Gld-1 RNAi expression. (2) user can view WLS score plots: X axis: samples; Y axis: WLS score || |
| | 8 | || 5. as a researcher I want to input genes from one pathway and show correlations in a graph || (1) user can paste a list of gene names into text field. (2) user can choose a correlation matrix. (3) user can view genes in circular graph with each edge showing the correlation strenght by thickness || |
| | 9 | || 6. as a researcher I want to input genes from one pathway and show QTL profiles in a graph || (1) user can paste a list of gene names into text field. (2) user can choose a specific experiemnt data set. (3) user can view genes in circular graph with QTL profiles next to gene || |
| | 10 | || 7. as a researcher I want to input genes from one pathway and compare correaltions between two conditions in a graph || (1) user can paste a list of gene names into text field. (2) user can choose two or more experiemnt data sets. (3) user can view genes from each conditions in circular graph with correlation strength by thickness (4) user can view genes between conditions in circular graph with correlation strength changes by thickness || |
| | 11 | || 8. as a researcher I want to input genes and visualize differential expression in a graph || (1) user can paste a list of gene names into text field. (2) user can choose a experiemnt data set with multiple conditions. (3) user can choose method to compute DE genes (4) view genes in ditrected circular graph with gradien color showing DE significance/fold changes || |
| | 12 | || 9. Similar story as 5-9, with input being "key word" from a biological process or gene fucntion etc. || same as story 5-9 || |
| | 13 | || 10. as a researcher I want to input genes, infer causal realtionship, and visualize it in a graph || (1) user can paste a list of gene names into text field. (2) user can choose a experiemnt data set. (3) user can view genes in ditrected circular graph with inferred causal probability displayed on the arrows || |
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