Changes between Version 13 and Version 14 of xQTLUserReview
- Timestamp:
- 2011-11-30T15:03:21+01:00 (13 years ago)
Legend:
- Unmodified
- Added
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xQTLUserReview
v13 v14 43 43 || Needed field || Example value || xQTL field || 44 44 || Spot ID || WUR_AGI_00001 || name || 45 || Wormbase ID || WBgene00000912 || description||46 || Splice variant || R13H8.1a || symbol||45 || Wormbase ID || WBgene00000912 || gene(xref->Gene) || 46 || Splice variant || R13H8.1a || transcript(xref->Transcript) || 47 47 || Probe sequence || || seq || 48 48 || Probe Chromosome || I || chromosome_name || … … 51 51 52 52 Samples [List] '''-> xQTL entity: Sample'''[[BR]] 53 List of samples. Sample ID, genotype, experiment 53 List of samples. Sample ID, genotype, experiment. 54 Sample properties == genotype matrix OF phenotype matrix 54 55 55 56 || Needed field || Example value || xQTL field || 56 57 || Sample ID || Sample000001 || name || 57 || Genotype || WN001 || ???||58 || Experiment || TEMP16_EXP || ???||58 || Genotype || WN001 || via Data (Measurement(name=Genotype), ObservedValue(value=WN001, feature=Genotype, target=Sample000001))|| 59 || Experiment || TEMP16_EXP || via Data || 59 60 || Remarks || || description || 60 61 61 62 Experiments [List] '''-> xQTL entity: ???'''[[BR]] 62 63 List of experiments, Experiment ID, what was measured, conditions, etc… 63 64 || Needed field || Example value || xQTL field || 65 || Experiment ID || TEMP16_EXP || name || 66 || Measured || Gene expression || ??? || 67 || Platform || WSU || ??? || 68 || Growing temperature || 16 || ??? || 69 || Stage || L4 || ??? || 70 || Hours || || ??? || 71 || Treatment || No || ??? || 72 || Remarks || || description || 64 Experiments = ProtocolApplications (== Data) 65 Repeat per sample! 66 67 || Needed field || Example value || xQTL field || 68 || Experiment ID || TEMP16_EXP || name of ProtocolApplication/Data|| 69 || Measured || Gene expression || tag of data set || 70 || Platform || WSU || phenotype of each sample in the set || 71 || Growing temperature || 16 || phenotype of each sample in the set|| 72 || Stage || L4 || phenotype of each sample in the set || 73 || Hours || || phenotype of each sample in the set || 74 || Treatment || No || phenotype of each sample in the set|| 75 || Remarks || || description of ProtocolApplication/Data|| 73 76 74 77 Projects [List] '''-> xQTL entity: ???'''[[BR]]
