wiki:ComputeStart

Version 45 (modified by george, 11 years ago) (diff)

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News

Enlighten Your Research Global Award: Virtual Machine Images for Life Science Research

Denver (USA) 18 November 2013 – One of the four prestigious "Enlighten Your Research Global" has been awarded to an idea developed by an ELIXIR working group for the sharing of virtual machines over research and education networks.

  • Posted: 9 years ago (Updated: 9 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute at IWSG-2013

MOLGENIS/compute was presented at 5th International Workshop on Science Gateways, IWSG 2013, Zurich, Switzerland

Visual Analytics for Bio-Workflows at NBIC-2013

Towards visual analytics of bio-workflows presentation was given at the NBIC-2013 conference, Lunteren, Netherlands

  • Posted: 11 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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Visual Analytics for Bio-Workflows at BIOINFORMATICS-2013

"Visualization of bioinformatics workflows for ease of understanding and design activities" paper will be presented at the BIOSTEC-BIOINFORMATICS-2013 conference, on February 11th, 2013, Bercelona, Spain. [http://www.molgenis.org/raw-attachment/blog ...

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  • Posted: 11 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute workshop at BioAssist meeting

MOLGENIS/compute workshop took place at the NBIC Bio Assist meeting, in Utrect, Oct.12, 2012

  • Posted: 11 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute at IWSG-Life 2012

MOLGENIS/compute demo was given at the 4th International Workshop on Science Gateways for Life Sciences, May 23-25 2012, Amsterdam, Netherlands

MOLGENIS/compute at NBIC-2012

MOLGENIS/compute demo was given at the NBIC-2012 conference in Lunteren, Netherlands, Apr.23, 2012

MOLGENIS/compute at BIOINFORMATICS-2012

MOLGENIS/compute was accepted as a full paper and presented at the International Conference on Bioinformatics Models, Methods and Algorithms, Algarve, Portugal, Feb.3 2012. (BIOINFORMATICS 2012 received 109 submissions, of which 14% were accepted as ...

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  • Posted: 11 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute at NPC-2011

Poster: "Monitoring and error-handling of bioinformatics workflow execution in a distributed environment" will be presented at the Netherlands Proteomics Conference, NPC-2011, Utrecht, Netherlands, January 13, 2011

  • Posted: 13 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute at PDP-2011

MOLGENIS/compute will be presented at the 19th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, PDP 2011, Ayia Napa, Cyprus, February 9-11, 2011. [http://www.molgenis.org/raw-attachment/blog/mcf-cyprus/pdp-201 ...

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  • Posted: 13 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
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Welcome to MOLGENIS/compute

What is MCF ?

MOLGENIS/compute is a framework for bioinformatics which enables data and computational workflow management in a distributed execution environment.

Why MOLGENIS/compute ?

High-throughput bioinformatics research is complex and requires the combination of multiple experimental approaches each producing large amounts of diverse data. The analysis and evaluation of these data are equally complex requiring specific integrations of various software components into complex workflows.

We provide functionality for bioinformaticians to specify the workflow of commands with simple interfaces, while at the same time scale up to hundreds of jobs to get the terabytes of genetic data processed by recent methods.

How does it work?

User Manual

Publications

Source Code

Collaborations and usages of MCF can be found at Collaborations

Who is behind MCF ?

MCF is created by the Genomics Coordination Center team.

People:

George Byelas

[Patrick Deelen]

[Freerk van Dijk]

[Martijn Dijkstra]

[Alexandto Kanterakis]

[Pieter Neerincx]

Morris Swertz

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