Create new instance of hvp_pilot after repeated errors.

• New distro . Changes : 
  • Changed fields in DB : molgenis_db.xml :
    • user_id userId
    • run , still same problem
  • Delete JSON servlet :
    • following back the steps ​http://gbic.target.rug.nl/trac/pheno/wiki/DespoinaLog/2010/04/27
    • pffff
  • New molgenis distro : hvp_pilot2 , new db hvp_pilot2
    • change molgenis.properties: db name.
    • change molgenis_db.xml:
      • copied db model from hvp_pilot .
    • change molgenis.ui.xml : \
    • Include jar files in Java EE module dependencies.
  • Problem with include javascript prototype libs through public String getCustomHtmlHeaders()
    • Include them as javascript files in molgenis/src/org/molgenis/framework/ui/userInerface.ftl :
      • * <script src="prototype.js" language="javascript"></script>
      • and also copy the javascript file in a directory inside molgenis_distro WebContent.
      • delete public String getCustomHtmlHeaders()
    • OK , prototype libs included!
    • hvp_pilot2 , ok !
    • Include lucene libs . CreateIndex?.java --. run as java application . Connects to DB (defined in the same file) and creates an index on the fields of the tables also defined in the same file.
      • OK , works.
      • Next Todo : Include all the functionality written in CreateIndex?.java in a plugin and retrieve data from DB through molgenis DB retrieval functions (see developers guide). .
    • SearchIndex? . :