Skype conference : skype call about the hackathon demo:

• Christine Chichester , Kees Burger, jahn.saito ,Erik van Mulligen , Paul Boekschoten ,Hailiang Mei (chat) , Reinout van Schouwen < Bharat Singh(sick) ,andra.waagmeeste ,david.van.enckevort
• demo not ready .
  • We need to get this going
  • what went wrong
  • let's try to install the bookmarklet
• erik: 2 verslons of the linker . version of nbic cannot work with cross domain
• request to a service with xml --> highlight was shown . cross domain thing problem …
  • javascript solution . "Nuko version " -> not handled correctly version --> transform to the nuke version --> currently working
• problem with session id : left panel not as powerful as imagined ..
• show biobank /literature & biobankers . No hyperlinks and form is rough
• Put code online so we can see that
• Split panel is missing
• press boorkmarklet --> bring the left panel with the biobank results .
• if pressed again -> detect the existing one and do not create a new panel
• barate is sick , so that his changes are not merged, (session id code)
• how other people could join ?
• Bharat's code --> server --> get it working
• (David) login to the server , get the new code

Later :

• problems fixed : Together with Bharat we finished the first part - the bookmarklet with highlighting. We developed some wrappers for the NBIC code (to make it compliant with what the new linker code requires). We will solve the issue of double left panels (requires some javascript development).

https://sites.google.com/a/nbiceng.net/hackathonii/remaining-issues?pli=1

Lucene Indexing

Precision & recall measurements :

• precision & recall lucene; ​http://lucene.apache.org/java/3_0_1/api/all/org/apache/lucene/benchmark/quality/QualityStats.html
• ​http://lucene.apache.org/java/2_4_1/api/org/apache/lucene/benchmark/quality/package-summary.html
• • use org.apache.lucene.benchmark.quality
• ​http://grepcode.com/file/repo1.maven.org/maven2/org.apache.lucene/lucene-benchmark/3.0.0/org/apache/lucene/benchmark/quality/QualityBenchmark.java *

downloaded and added jar : (from http://repo1.maven.org/maven2/lucene/lucene/1.4.3/)

• lucene-1.4.3.jar
• lucene-1.4.3-sources.jar
• lucene-core-3.0.1-javadoc.jar

This produced exception at already running search function : javax.servlet.ServletException: Servlet execution threw an exception

(some kind of conflict ) . Removed .