Changes between Version 1 and Version 2 of DespoinaLog/2012/05/11


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Timestamp:
2012-05-16T10:05:03+02:00 (13 years ago)
Author:
antonak
Comment:

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  • DespoinaLog/2012/05/11

    v1 v2  
    1 == BBmri meeting in Utrecht  ==
    2 ===     bbmri meeting @utrecht 10 May
     1== BBmri meeting in Utrecht ==
     2=== Absract for HandsOnBiobanks @ upsalla ===
     3=== Fixed Bugs  ===
     4logout from header (name of application at the ui file)
    35
     6own field hidden 
     7
     8owns field appearing null - fixed 
     9
     10=== bbmri meeting @utrecht 10 May ===
    411==========================================
    512
    6 download : 
     13download :
    714
    815we have tkep a stable version (back up)
    916
    10 deployment procedures 
     17deployment procedures
    1118
    1219how data will be inserted/update
    1320
    14 no feedback: do we have LOG logging of users - 
     21no feedback: do we have LOG logging of users -
    1522
    1623users to be able to change their own input - personalized.
    1724
    18 test the version extensively before deploying 
     25test the version extensively before deploying
    1926
    20 FOR LATER : 
     27FOR LATER :
    2128
    22 add the ability to add PERSONALIZED entries form users. 
     29add the ability to add PERSONALIZED entries form users.
    2330
    2431use tree …..or others
    … …  
    2633server monkey
    2734
    28 Features 
     35Features
    2936
    30 user changes/notifications: 
     37user changes/notifications:
    3138
    3239 * not be able to add NEW biobanks
    3340
    34  * Be able to edit  the data that is already there but admin should get a notification of the changes (NOT approval) .
     41 * Be able to edit  the data that is already there but admin should get a notification of the changes (NOT approval) .
    3542
    3643 * Admin should be abel to see the previous values.
    … …  
    3845 * confirmation to users of the changes in data (email ) add an option , do you want to be notified, or add multiple people to be notified .also as an option notification form (email , a form )
    3946
    40  * the notification PER DAY not on every change 
     47 * the notification PER DAY not on every change
    4148
    42  * permissions 
     49 * permissions
    4350
    44  * one person can see multiple biobanks 
     51 * one person can see multiple biobanks
    4552
    46  * and one biobank can belong to multiple people 
     53 * and one biobank can belong to multiple people
    4754
    48  * test today and update on Monday 
     55 * test today and update on Monday
    4956
     57releases :
    5058
    51 
    52 releases : 
    53 
    54 ------------------------
    55 
    56 how to integrate to pheno model (technical): 
     59----
     60how to integrate to pheno model (technical):
    5761
    5862================
    … …  
    6064END OF SPRINT .
    6165
    62 bring the issue of commit-break problem . 
     66bring the issue of commit-break problem .
    6367
    64 have the latest changes separately and update at a specific point . 
     68have the latest changes separately and update at a specific point .
    6569
    6670==================
    6771
    68 NOT WORKING : logout from header 
     72NOT WORKING : logout from header
    6973
    70  ===
     74  ===
     75
    7176=== My Notes ===
    72     In order to go back in the pheno model we have to make the mapping between all the tables : 
     77  In order to go back in the pheno model we have to make the mapping between all the tables :
    7378
     79 * Biobank category incudes the values that are include din the xls file (in the first column with bold letters .Obviously this list cannot be cleaned up against a proper ontology . Although is currently  extending the ontology term .
    7480
    75  * Biobank category incudes the values that are include din the xls file (in the first column with bold letters .Obviously this list cannot be cleaned up against a proper ontology . Although is currently  extending the ontology term . 
     81  <entity name="!BiobankCategory " extends="!OntologyTerm ">
    7682
    77                 <entity name="!BiobankCategory" extends="!OntologyTerm">
    78 
    79 
    80  * Biobank datatype currently extending the ontology term . Contains the values of the biodata column e.g DNA , RNA etc. Obviously this list cannot be cleaned up against a proper ontology . Although is currently  extending the ontology term.
    81  * Biobank coordinator : extending Person (values of the coordinators) Currently the entity Person is connected to   the molgenis user so all the coordinators  CAN be potential users of the system . 
    82  * Biobank  - describes the entries of the different bibanks in nl se auto ta epimerous podia 8a sunde8oun me to pheno . . opt kale pedio 8a einai xref/mref se pinnaces p.x. 
     83 * Biobank datatype currently extending the ontology term . Contains the values of the biodata column e.g DNA , RNA etc. Obviously this list cannot be cleaned up against a proper ontology . Although is currently  extending the ontology term.
     84 * Biobank coordinator : extending Person (values of the coordinators) Currently the entity Person is connected to   the molgenis user so all the coordinators  CAN be potential users of the system .
     85 * Biobank  - describes the entries of the different bibanks in nl se auto ta epimerous podia 8a sunde8oun me to pheno . . opt kale pedio 8a einai xref/mref se pinnaces p.x.
    8386   * cohort could be investigation ??
    8487   * Acronym - observed value ? (ektos kai an uparxei akrivws acronym se kapoio allo montelo ) 8a eprepe na uparxei auyto se kapoio apo ta montel alla den to vlepw ???
    85    * Category - uparxei sot phi model 
    86    * subcategory - pali category 
    87    * topic h uparxei h la8os 8umame ; an den uparxei  tote einai category 
     88   * Category - uparxei sot phi model
     89   * subcategory - pali category
     90   * topic h uparxei h la8os 8umame ; an den uparxei  tote einai category
    8891   * Coordinator -- mref to person (to anaferoume kai parapaw)
    89    * Intsitute - mref to Institutions 
    90    * !PanelSize - Panel entity is in pheno , but I cannot se the panel soiree anywhere . maybe introduce it ? 
    91    * biodata  - ref biodatatype (see above)
     92   * Intsitute - mref to Institutions
     93   * !PanelSize - Panel entity is in pheno , but I cannot se the panel soiree anywhere . maybe introduce it ?
     94   * biodata  - ref biodatatype (see above)
    9295   * !GwaDataNum- observed value
    93    * !GwaPlatform - observed value 
    94    * !GwaComments - observed value 
    95    * !GeneralComments - observed value 
     96   * !GwaPlatform - observed value
     97   * !GwaComments - observed value
     98   * !GeneralComments - observed value
    9699   * Publications - OLA tA publicatin einai adia KAI o pinakas publication einai ADEIOS . EIte to xrhsimopoieoume eite OXI ?
    97    * Approved - we need a  boolean variable otherwise a string in observed value.
    98    * change log is fixed as a separate table.  
    99    *
    100 
    101  
     100   * Approved - we need a  boolean variable otherwise a string in observed value.
     101   * change log is fixed as a separate table.
     102   *