wiki:DroparconDataManagement

Version 1 (modified by Pieter Neerincx, 11 years ago) (diff)

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Data Management

Table of Contents

  1. Access
  2. Directory structure a.k.a. what is where

Access

Directory structure a.k.a. what is where

Droparcon data located on the Groningen cluster is stored in /target/gpfs2/gcc/groups/droparcon/. NOTE: When accessing the site via sftp this will be your root folder. Hence you will be chrooted to /target/gpfs2/gcc/groups/droparcon/, which will appear to be your /. We'll refer to /target/gpfs2/gcc/groups/droparcon/ as ${DROPARCON_HOME}.

  • ${DROPARCON_HOME}/home/(your_account)/ Home dirs of individual users.
  • ${DROPARCON_HOME}/rawdata/ Raw data like for example FastQ files.
  • ${DROPARCON_HOME}/projects/ Processed data like ongoing and finished assemblies