MOLGENIS suite overview: modules and products

Here you can find summaries and links on the components listed in the ticket system. In the software, these components become packages. For example: org.molgenis.db for shared pacakes or org.col7a1 for application specific packages. We distinguish two groups of components as listed below. Also the use of keywords is explained which we use to clarify relationships from shared packages to application. For example: tickets in the 'auth' component can be marked with keywords 'animaldb' to enable tracking by the animaldb team.

	end product:	biobankcatalog	animaldb	mutationdb?	lims	xqtl	impute?	ngs	gwas?	mass_spec	microarray?
	lead:	joris, despoina	erik	robert	jessica (ngs) joris (geno)	joeri, danny	george, alex, andre	Freerk, Wil	alex, roan, andre	george	alex, jessica
module:	users:	lifelines bbmri bioshare nbic	fwn	nbic col7a1 chd7	medgen lifelines nbic	panacea euratrans bioshare sysgenet	medgen lifelines bbmri	bbmri medgen	lifelines bioshare medgen	nbic npc fwn	bbmri medgen
molgenis	all	y	y	y	y	y	y		y	y	y
datamodel?	morris, erik, joeri	y	y	y	y	y	y		y	y	y
loaders?	joeri roan	y		y		y	y		y		y
auth	robert, erik	y	y	y	y	y	y		y	y	y
search	despoina	y	y
matrix	joeri, joris	y	y	y
lims?	erik, jessica, joris		y		y		y
pipeline?	joeri, george, morris				y	y	y		y	y
trac	roan, despoina
servers	ger, robert, freerk, joeri	y	y		y	y	y		y	y	y

= Graphical overview of modules =

[…]

digraph g {

node [shape=box,style=filled,color=white] rankdir="RL"

subgraph cluster_0 {

style=filled; color=lightgrey; label = "partner & user groups";

lifelines; bbmri; nbic; panacea; sysgenet; euratrans; gen2phen; gbic; medgen; fwn_chronobiology; npc_mass_spec_center; gids; col7a1; chd7; amc_nbic;

}

subgraph cluster_1 {

style=filled; color=lightgrey; label = "apps"; biobankcatalog animaldb mutationdb xqtl_workbench ngs_workbench gwas_workbench ms_workbench ma_workbench jamboreecards

}

subgraph cluster_2 {

style=filled; color=lightgrey; label = "molgenis"; phenoexplorer; db; ui; auth; molgenis; workbench; lims; convertors; datamodels; xgap; pheno;

}

#relations between projects and apps

col7a1 -> mutationdb; chd7 -> mutationdb;

fwn_chronobiology -> animaldb;

bbmri -> biobankcatalog; nbic -> biobankcatalog; lifelines -> biobankcatalog; gen2phen -> biobankcatalog; gids -> biobankcatalog;

gbic -> xqtl_workbench; panacea -> xqtl_workbench; sysgenet -> xqtl_workbench; euratrans -> xqtl_workbench;

npc_mass_spec_center -> ms_workbench;

bbmri -> ngs_workbench; medgen -> ngs_workbench; medgen -> ngs_workbench;

bbmri -> ma_workbench;

bbmri -> gwas_workbench lifelines -> gwas_workbench; gids -> gwas_workbench; medgen -> gwas_workbench;

amc_nbic -> jamboreecards;

#relations between apps and components

ngs_workbench ->workbench; gwas_workbench -> workbench; xqtl_workbench -> workbench; ms_workbench -> workbench; ma_workbench -> workbench;

biobankcatalog -> phenoexplorer; animaldb -> phenoexplorer; mutationdb -> phenoexplorer; workbench -> phenoexplorer;

animaldb -> lims; workbench -> lims;

workbench -> convertors;

jamboreecards -> molgenis;

#relations between components and sub-components

molgenis -> auth; molgenis -> db; molgenis -> ui;

lims -> datamodels; workbench -> datamodels; phenoexplorer -> datamodels; convertors -> datamodels;

datamodels -> molgenis; datamodels -> pheno; datamodels -> xgap;

}

}}}