MOLGENIS suite overview: modules and products

Here you can find summaries and links on the components listed in the ticket system. In the software, these components become packages. For example: org.molgenis.db for shared pacakes or org.col7a1 for application specific packages. We distinguish two groups of components as listed below. Also the use of keywords is explained which we use to clarify relationships from shared packages to application. For example: tickets in the 'auth' component can be marked with keywords 'animaldb' to enable tracking by the animaldb team.

	end product:	biobankcatalog	animaldb	ngs	mutationdb?	xqtl	impute?	gwas?	mass_spec	microarray?
	lead:	joris, despoina	erik	freerk, jessica, wil	robert	joeri, danny	george, alex, andre	alex, roan	george	alex jessica
module:	users:	lifelines bbmri bioshare nbic	fwn	bbrmi medgen nbic	nbic col7a1 chd7	panacea euratrans bioshare sysgenet	medgen lifelines bbmri	lifelines bioshare medgen	nbic npc fwn	bbmri
molgenis	all	y	y	y	y	y	y	y	y	y
datamodel?	morris, erik, joeri	y	y	y	y	y	y	y	y	y
convertor?	joeri roan	y				y	y	y		y
auth	robert, erik	y	y	y	y	y	y	y	y	y
search	despoina	y	y
matrix	joeri, joris	y	y		y
lims?	erik, jessica, joris		y	y			y
pipeline?	joeri, george, morris			y		y	y	y	y
ngs_pipeline	freerk wil
trac	roan despoina
servers	ger, robert, freerk, joeri	y	y	y	y	y	y	y	y	y

= Graphical overview of modules =

[…]

digraph g {

node [shape=box,style=filled,color=white] rankdir="RL"

subgraph cluster_0 {

style=filled; color=lightgrey; label = "partner & user groups";

lifelines; bbmri; nbic; panacea; sysgenet; euratrans; gen2phen; gbic; medgen; fwn_chronobiology; npc_mass_spec_center; gids; col7a1; chd7; amc_nbic;

}

subgraph cluster_1 {

style=filled; color=lightgrey; label = "apps"; biobankcatalog animaldb mutationdb xqtl_workbench ngs_workbench gwas_workbench ms_workbench ma_workbench jamboreecards

}

subgraph cluster_2 {

style=filled; color=lightgrey; label = "molgenis"; phenoexplorer; db; ui; auth; molgenis; workbench; lims; convertors; datamodels; xgap; pheno;

}

#relations between projects and apps

col7a1 -> mutationdb; chd7 -> mutationdb;

fwn_chronobiology -> animaldb;

bbmri -> biobankcatalog; nbic -> biobankcatalog; lifelines -> biobankcatalog; gen2phen -> biobankcatalog; gids -> biobankcatalog;

gbic -> xqtl_workbench; panacea -> xqtl_workbench; sysgenet -> xqtl_workbench; euratrans -> xqtl_workbench;

npc_mass_spec_center -> ms_workbench;

bbmri -> ngs_workbench; medgen -> ngs_workbench; medgen -> ngs_workbench;

bbmri -> ma_workbench;

bbmri -> gwas_workbench lifelines -> gwas_workbench; gids -> gwas_workbench; medgen -> gwas_workbench;

amc_nbic -> jamboreecards;

#relations between apps and components

ngs_workbench ->workbench; gwas_workbench -> workbench; xqtl_workbench -> workbench; ms_workbench -> workbench; ma_workbench -> workbench;

biobankcatalog -> phenoexplorer; animaldb -> phenoexplorer; mutationdb -> phenoexplorer; workbench -> phenoexplorer;

animaldb -> lims; workbench -> lims;

workbench -> convertors;

jamboreecards -> molgenis;

#relations between components and sub-components

molgenis -> auth; molgenis -> db; molgenis -> ui;

lims -> datamodels; workbench -> datamodels; phenoexplorer -> datamodels; convertors -> datamodels;

datamodels -> molgenis; datamodels -> pheno; datamodels -> xgap;

}

}}}