wiki:Courses/ComputationalMolecularBiologyResearch2016

Version 20 (modified by Pieter Neerincx, 9 years ago) (diff)

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Computational Molecular Biology Research

Table of Contents

  1. Course Overview
  2. Rating
  3. Projects
    1. Methods/tools for detection of fusion gene transcripts in RNA sequencing
    2. Single cell RNA sequencing quantification
    3. Improved detection of regulatory transcription factor binding sites in …
  4. Course Schedule
    1. Venue
    2. Regular events
    3. Week 1
    4. Weeks 2-5
    5. Week 6
    6. Contact

Course Overview

This research course demonstrates the in silico data analysis used for genetics research at the RUG and UMCG. The emphasis of the research topics is on finding better methods for the analysis of high throughput data generated using technologies like Next Generation Sequencing (both DNA and RNA), Gene expression arrays, Genome wide association studies (GWAS), etc.

In the first week the research topics will be introduced and a minimal introduction for scripting in Bash and R will be provided. At the end of the first week the students will choose a research project to work on under supervision of a PhD-student or Postdoc. In weeks 2-5 the in silico experiments are performed. The 6th and last week is reserved for writing a report, preparing a presentation and presenting the results to the other in the department.

Rating

Students will be rated as follows:

  • 50% Code + data produced during practical work
  • 30% Report
  • 20% Presentation

Projects

  1. 2012-10-26_EOS26: Sprint 26
  2. 5gpm
  3. AboutGcc: About Genomics Coordination Center
  4. Acknowledgements: Acknowledgements
  5. AddingDataTypes: Adding data types
  6. AddingUserInterfaces: How to add custom user interfaces
  7. AlexPage: Since 15 April 2010
  8. AllAssignedTickets: All Assigned Tickets
  9. AllClosedTickets: All closed tickets
  10. AllTickets: All Tickets
  11. AndreDeVries: André de Vries
  12. AnimalDBRoadMap: AnimalDB Roadmap (proposal):
  13. AnimalMolgenis
  14. AnimaldbStart: Welcome to AnimalDB.org
  15. AppCatalogue: AppCatalogue: using a catalog to browse and requests study data
  16. AppInstaller: AppInstaller: SOPs and automated procedures to instantiate a new app
  17. AppResearchPortal: AppResearchPortal: user can access data via research portal
  18. Apps/Animal: AnimalDB
  19. Apps/AnimalDb
  20. Apps/MageTab: MOLGENIS for MAGE-TAB
  21. Apps/WormQTL
  22. AstroWise
  23. AteNotes: Ate's notes
  24. AuthModule
  25. AuthModule/Requirements: AuthModule Requirements list
  26. AuthModule/RowLevelPermission: Row Level Permission design
  27. AuthModule/TechDesign: Auth Module design docs
  28. AuthModule/UserStories: Authentication and Authorization module user stories
  29. AuthModuleUserStories
  30. BBMRI: BBMRI catalogues project
  31. BBMRI_task2: Primary goal: to have the semantic search available for BBMRI catalog
  32. BackLog: General backlog
  33. BasicFileHandler
  34. BatchesUserStories: Batches User Stories
  35. Batchesplugin
  36. BinToCsv
  37. BioAssist: Meeting on 19/2/2010
  38. BioGrid
  39. BioInformatics
  40. BioMedBridges
  41. BioShare: BIOSHARE
  42. BiobankCatalog: BiobankCatalog
  43. BiobankingPlatform: BiobankingPlatform
  44. BrsProject
  45. BuildPath: Build path
  46. Byelas: George Byelas, Ph.D., PDEng.
  47. ByelasCover
  48. ByelasPDEngPoster
  49. CLCdemo27Jan11: CLCbio demo 27 Jan 2011
  50. CamelCase: CamelCase
  51. CaseSensitivityProblems: Case sensitivity problems
  52. CatalogMinutes20120123: LifeLines Catalog meeting 2012/01/23
  53. CatalogMinutes20120203: Main goals
  54. CatalogMinutes20120310: Next steps features that should be implemented/fixed
  55. Catalogue: Research Catalog
  56. ChangeLog: Change Log
  57. CheckoutMolgenisWorkspace: Check-out latest MOLGENIS source code into Eclipse Workspace from …
  58. CilairDB: CILAIR database
  59. CilairMolgenis
  60. ClusterJobs
  61. ClusterPlugin
  62. CodeConventions
  63. ComparativeGenomicsProject
  64. ComparativeProject: Comparative Analysis of Genetic Screens
  65. ComputationResource
  66. ComputeRoadmap: Compute Roadmap
  67. ComputeStart: About MOLGENIS/compute
  68. ComputeStartArchitecture: MCF Architecture
  69. ComputeStartDataModel: MCF Data Model
  70. ComputeStartDefault: MCF Compute Manager
  71. ComputeStartExample1: Job Manager Example1
  72. ComputeStartExample2: Worker Configuration Example
  73. ComputeStartExample3: Resource Manager
  74. ComputeStartExample4: Tasks distribution over different computational resources
  75. ComputeStartExample6: Script Example
  76. ComputeStartExample7: Job Monitoring
  77. ComputeStartExamples: MCF Compute Manager Code Examples
  78. ComputeStartOnline: MCF Collaborations
  79. ComputeStartSetup: MCF Installation Guide
  80. ComputeVM: About Compute5 VM
  81. ConnectToXeroxPrintersForMac
  82. Contact: Contact the GCC
  83. Courses: Courses
  84. Courses/BASH
  85. Courses/ComputationalMolecularBiologyResearch2015: Computational Molecular Biology Research
  86. Courses/ComputationalMolecularBiologyResearch2015/P1: Increasing diagnostic yield of fast whole genome diagnostics for new …
  87. Courses/ComputationalMolecularBiologyResearch2015/P6: Increasing diagnostic yield of fast whole genome diagnostics for new …
  88. Courses/ComputationalMolecularBiologyResearch2015/P7: Genome-wide transcriptome analysis for detecting lncRNAs involved in …
  89. Courses/ComputationalMolecularBiologyResearch2015/P8: Changes in the gut microbiome: Analyzing Whole Genome Shotgun data
  90. Courses/ComputationalMolecularBiologyResearch2015/P9: Non-invasive early detection of (pre-)diabetes using Advanced Glycemic …
  91. Courses/ComputationalMolecularBiologyResearch2016: Computational Molecular Biology Research
  92. Courses/ComputationalMolecularBiologyResearch2016/P1: Increasing diagnostic yield of fast diagnostics using NGS
  93. Courses/ComputationalMolecularBiologyResearch2016/P2: Benchmarking RNAseq gene expression quantification tools
  94. Courses/ComputationalMolecularBiologyResearch2016/P3: Analysis of trans-spliced transcripts in RNA seq data
  95. Courses/ComputationalMolecularBiologyResearch2016/P4: Single cell RNA seq quantification
  96. Courses/ComputationalMolecularBiologyResearch2016/P5: Improved DNA Motif finding
  97. Courses/ComputationalMolecularBiologyResearch2016/P6: Detection of RNA-editing sites in human RNA-sequencing data
  98. Courses/DataIntegration: Data Sources
  99. CsvToBin
  100. CurrentlyScheduledTickets: Currently scheduled
  101. CytoScape
  102. DAS: XGAP-DAS connection project
  103. DJWS: DJWS: Standalone webserver for rapid application testing
  104. DataAnalysisFramework
  105. DataArchiver: Data Archiver usage
  106. DataConversionSchema: General schema for fitting any experimental data into XGAP
  107. DataMatrix
  108. DataSets: Example data sets
  109. DataWizard: Using the Data Import Wizard
  110. DatabasePermissions: To use MOLGENIS you need proper permissions
  111. DesignGg
  112. DespoinaLog: Log of Despoina
  113. DespoinaLog/2010/02/08: Log of 2010-02-08
  114. DespoinaLog/2010/02/10: Log of 2010-02-10
  115. DespoinaLog/2010/02/15: Log of 2010-02-15
  116. DespoinaLog/2010/02/16: Log of 2010-02-16
  117. DespoinaLog/2010/02/17
  118. DespoinaLog/2010/02/19: Log of 2010-02-19
  119. DespoinaLog/2010/03/04: Log of 2010-03-04
  120. DespoinaLog/2010/03/05: Log of 2010-03-05
  121. DespoinaLog/2010/03/08: Log of 2010-03-08
  122. DespoinaLog/2010/03/09: Log of 2010-03-09
  123. DespoinaLog/2010/03/10: Log of 2010-03-10
  124. DespoinaLog/2010/03/11: Log of 2010-03-11
  125. DespoinaLog/2010/03/12: Log of 2010-03-12
  126. DespoinaLog/2010/03/13
  127. DespoinaLog/2010/03/14
  128. DespoinaLog/2010/03/15: Log of 2010-03-15
  129. DespoinaLog/2010/03/16: Log of 2010-03-16
  130. DespoinaLog/2010/03/17: Log of 2010-03-17
  131. DespoinaLog/2010/03/18
  132. DespoinaLog/2010/03/19: Version 0.5 of term choose widget.
  133. DespoinaLog/2010/03/20
  134. DespoinaLog/2010/03/22
  135. DespoinaLog/2010/03/23
  136. DespoinaLog/2010/03/24
  137. DespoinaLog/2010/03/25: Run D2R server
  138. DespoinaLog/2010/03/26
  139. DespoinaLog/2010/03/30
  140. DespoinaLog/2010/03/31
  141. DespoinaLog/2010/04/07
  142. DespoinaLog/2010/04/08
  143. DespoinaLog/2010/04/09
  144. DespoinaLog/2010/04/12: JSON in JAVA
  145. DespoinaLog/2010/04/13
  146. DespoinaLog/2010/04/14: GBIC day
  147. DespoinaLog/2010/04/15: Common collections error @ Peregrine in molgenis :
  148. DespoinaLog/2010/04/16
  149. DespoinaLog/2010/04/19
  150. DespoinaLog/2010/04/20: Installation Notes
  151. DespoinaLog/2010/04/21: Installation Notes .
  152. DespoinaLog/2010/04/22: Mysql installation , Lucene links.
  153. DespoinaLog/2010/04/23: Mysql installation with macports (macOS 10.6.3), Json libs in HVP pilot
  154. DespoinaLog/2010/04/26: Add javascript libs  in molgenis  HVP pilot & Peregrine run test
  155. DespoinaLog/2010/04/27: HVP pilot add functionality (build servlet in molgenis)
  156. DespoinaLog/2010/04/28: HVP pilot & Lucene on Ontologies
  157. DespoinaLog/2010/04/29: Next Steps , notes & links on OpenData?, nano publications & Lucene …
  158. DespoinaLog/2010/05/03: Build Lucene Index (in java class)
  159. DespoinaLog/2010/05/04: Problems in Molgenis update
  160. DespoinaLog/2010/05/06: Create new instance of hvp_pilot after repeated errors.
  161. DespoinaLog/2010/05/07: How is Lucene index build
  162. DespoinaLog/2010/05/10
  163. DespoinaLog/2010/05/11: SPASQL
  164. DespoinaLog/2010/05/12: Why rdf and not xml
  165. DespoinaLog/2010/05/17: Create Index (lucene)
  166. DespoinaLog/2010/05/18
  167. DespoinaLog/2010/05/19
  168. DespoinaLog/2010/05/20
  169. DespoinaLog/2010/05/21
  170. DespoinaLog/2010/05/25: Next todos :
  171. DespoinaLog/2010/05/26
  172. DespoinaLog/2010/05/27
  173. DespoinaLog/2010/05/28
  174. DespoinaLog/2010/05/31
  175. DespoinaLog/2010/06/01
  176. DespoinaLog/2010/06/02
  177. DespoinaLog/2010/06/03
  178. DespoinaLog/2010/06/04: LUCENE Document should be created for each table (entity?) that is …
  179. DespoinaLog/2010/06/07
  180. DespoinaLog/2010/06/08
  181. DespoinaLog/2010/06/09
  182. DespoinaLog/2010/06/10
  183. DespoinaLog/2010/06/11
  184. DespoinaLog/2010/06/14
  185. DespoinaLog/2010/06/15: debug on Lucene indexing on molgenis dbs
  186. DespoinaLog/2010/06/16
  187. DespoinaLog/2010/06/17: Current progress with Lucene
  188. DespoinaLog/2010/06/18: Using Solrj from java
  189. DespoinaLog/2010/06/20
  190. DespoinaLog/2010/06/21
  191. DespoinaLog/2010/06/23
  192. DespoinaLog/2010/06/24
  193. DespoinaLog/2010/06/25
  194. DespoinaLog/2010/06/28
  195. DespoinaLog/2010/06/29
  196. DespoinaLog/2010/06/30
  197. DespoinaLog/2010/07/01
  198. DespoinaLog/2010/07/07
  199. DespoinaLog/2010/09/02
  200. DespoinaLog/2010/09/05: How to configure and run query expansion in molgenis4phenotype
  201. DespoinaLog/2010/09/06
  202. DespoinaLog/2010/09/07
  203. DespoinaLog/2010/09/08
  204. DespoinaLog/2010/09/09
  205. DespoinaLog/2010/09/10: Install biobank_search plugin in moglenis4phenotype or animalDB and …
  206. DespoinaLog/2010/09/13: biobank search plugin in molgenis4phenotype
  207. DespoinaLog/2010/09/14: DONE : new configuration file in biobank search plugin
  208. DespoinaLog/2010/09/15: Query expansion biobank search TODOs
  209. DespoinaLog/2010/09/16: Ontocat Index created
  210. DespoinaLog/2010/09/17
  211. DespoinaLog/2010/09/17+: Bioassist meeting
  212. DespoinaLog/2010/09/20: Biobanking hackathon II
  213. DespoinaLog/2010/09/21: Alternative solution for reaching configuration file
  214. DespoinaLog/2010/09/22
  215. DespoinaLog/2010/09/23: Molgenis 4 phenotype :
  216. DespoinaLog/2010/09/24: Molgenis4phenotype:
  217. DespoinaLog/2010/09/28: Skype conference : skype call about the hackathon demo:
  218. DespoinaLog/2010/09/29
  219. DespoinaLog/2010/09/30: Molgenis4phenotype
  220. DespoinaLog/2010/10/1: Molgenis semantics
  221. DespoinaLog/2010/10/11
  222. DespoinaLog/2010/10/14: virtuoso
  223. DespoinaLog/2010/10/15: Bioassist meeting
  224. DespoinaLog/2010/10/18: Virtuoso
  225. DespoinaLog/2010/10/19: 2010-10-19
  226. DespoinaLog/2010/10/20: Import data into bbmri
  227. DespoinaLog/2010/10/21
  228. DespoinaLog/2010/10/22
  229. DespoinaLog/2010/10/25
  230. DespoinaLog/2010/10/26
  231. DespoinaLog/2010/10/27: Trac News item
  232. DespoinaLog/2010/10/28: External Ontology
  233. DespoinaLog/2010/10/29
  234. DespoinaLog/2010/10/4: MolgenisSemantics?
  235. DespoinaLog/2010/10/5
  236. DespoinaLog/2010/10/6: Presentation for bioassit lectures.
  237. DespoinaLog/2010/10/7
  238. DespoinaLog/2010/10/8
  239. DespoinaLog/2010/11/01
  240. DespoinaLog/2010/11/04
  241. DespoinaLog/2010/11/05
  242. DespoinaLog/2010/11/08
  243. DespoinaLog/2010/11/09: Searches on BBMRI
  244. DespoinaLog/2010/11/10: Symposium on biological/bioinformatics metadata capture formats
  245. DespoinaLog/2010/11/11
  246. DespoinaLog/2010/11/12
  247. DespoinaLog/2010/11/15
  248. DespoinaLog/2010/11/16: How to install a trac plugin
  249. DespoinaLog/2010/11/17
  250. DespoinaLog/2010/11/22
  251. DespoinaLog/2010/11/23: use case entity in pheno model
  252. DespoinaLog/2010/11/24: an alternative way to upload a war file in the gbic server :
  253. DespoinaLog/2010/11/25: gbic server for bbmri : & Add the auth module in BBMRI
  254. DespoinaLog/2010/11/26: Trac adding captcha
  255. DespoinaLog/2010/11/30
  256. DespoinaLog/2010/12/01
  257. DespoinaLog/2010/12/02
  258. DespoinaLog/2010/12/03: How to Resolve Java Virtual Machine Out of Memory Issue
  259. DespoinaLog/2010/12/06
  260. DespoinaLog/2010/12/07: Biobanks missing from server
  261. DespoinaLog/2010/12/08: Inconsistency with OntologyTerm table
  262. DespoinaLog/2010/12/09: Inconsistency with biobank table (pheno & gcc project)
  263. DespoinaLog/2010/12/10
  264. DespoinaLog/2010/12/13
  265. DespoinaLog/2010/12/14: Upload gcc bbmri xls data :
  266. DespoinaLog/2010/12/15: import xls data (bbmri into gcc) :
  267. DespoinaLog/2010/12/16
  268. DespoinaLog/2010/12/20: latest version of d2rq
  269. DespoinaLog/2010/12/21
  270. DespoinaLog/2011/01/10: Get started in lifelines
  271. DespoinaLog/2011/01/12
  272. DespoinaLog/2011/01/13
  273. DespoinaLog/2011/01/14: Bbmri on Virtual server
  274. DespoinaLog/2011/01/17: "Too many (index) files opened" exception by Lucene reader .
  275. DespoinaLog/2011/01/18: = Ontology relation to models : =
  276. DespoinaLog/2011/01/20: Next (small) todos in BBMRI
  277. DespoinaLog/2011/01/24: Todos :
  278. DespoinaLog/2011/01/25: Attempt to use Matrix implementations in molgenis to import LifeLines data
  279. DespoinaLog/2011/01/26: Matrix integrated into Biobank & LL data uploaded in biobank (Data)
  280. DespoinaLog/2011/01/27: Matrix integrated into Biobank & LL data uploaded in biobank (Data)
  281. DespoinaLog/2011/02/02: OntocatREST :
  282. DespoinaLog/2011/02/03: case sensitivity issue in mysql (linux on vm7)
  283. DespoinaLog/2011/02/04
  284. DespoinaLog/2011/02/06
  285. DespoinaLog/2011/02/07: * Continue on SPSS import
  286. DespoinaLog/2011/02/09
  287. DespoinaLog/2011/02/10: BBMRI Catalogue Corrections after 1st Demo
  288. DespoinaLog/2011/02/11
  289. DespoinaLog/2011/02/14
  290. DespoinaLog/2011/02/15: lifelines@gcc
  291. DespoinaLog/2011/02/21: BBMRI xls import
  292. DespoinaLog/2011/02/22: Lifelines spss export
  293. DespoinaLog/2011/02/23
  294. DespoinaLog/2011/02/28: SPSS export working.
  295. DespoinaLog/2011/03/01
  296. DespoinaLog/2011/03/02
  297. DespoinaLog/2011/03/04
  298. DespoinaLog/2011/03/07: BBMRI demo
  299. DespoinaLog/2011/03/08
  300. DespoinaLog/2011/03/09
  301. DespoinaLog/2011/03/10
  302. DespoinaLog/2011/03/11: BBMRI Catalogue
  303. DespoinaLog/2011/03/14: test Join query :
  304. DespoinaLog/2011/03/22
  305. DespoinaLog/2011/03/29
  306. DespoinaLog/2011/03/30: On comments of bbmri :
  307. DespoinaLog/2011/03/31
  308. DespoinaLog/2011/04/05: BBMRI comments
  309. DespoinaLog/2011/04/07
  310. DespoinaLog/2011/04/12: Vaadin
  311. DespoinaLog/2011/04/13
  312. DespoinaLog/2011/05/03
  313. DespoinaLog/2011/06/20
  314. DespoinaLog/2011/06/23
  315. DespoinaLog/2011/07/29
  316. DespoinaLog/2011/09/23
  317. DespoinaLog/2011/09/26
  318. DespoinaLog/2011/10/18
  319. DespoinaLog/2011/11/25
  320. DespoinaLog/2011/12/01
  321. DespoinaLog/2011/12/09
  322. DespoinaLog/2012/02/03: End of sprint demo's
  323. DespoinaLog/2012/02/07
  324. DespoinaLog/2012/02/08: Molgenis 06 for bbmri =
  325. DespoinaLog/2012/02/13: tomcat -eclipse problem
  326. DespoinaLog/2012/02/14
  327. DespoinaLog/2012/02/17
  328. DespoinaLog/2012/02/24
  329. DespoinaLog/2012/02/27
  330. DespoinaLog/2012/03/01
  331. DespoinaLog/2012/03/05
  332. DespoinaLog/2012/03/16
  333. DespoinaLog/2012/03/21
  334. DespoinaLog/2012/04/18
  335. DespoinaLog/2012/04/19
  336. DespoinaLog/2012/05/09: HOW TO DEPLOY bbmri on NEW server
  337. DespoinaLog/2012/05/10
  338. DespoinaLog/2012/05/11: BBmri meeting in Utrecht
  339. DespoinaLog/2012/05/14: bug fixes on server :
  340. DespoinaLog/2012/05/15: bbmri issues
  341. DespoinaLog/2012/05/16
  342. DespoinaLog/2012/05/18
  343. DespoinaLog/2012/05/29
  344. DespoinaLog/2012/06/07
  345. DespoinaLog/2012/06/12
  346. DespoinaLog/2012/06/14
  347. DespoinaLog/2012/06/19
  348. DespoinaLog/2012/08/22
  349. DespoinaLog/2012/10/05
  350. DespoinaLog/2012/10/08: problem with importing cohort
  351. DespoinaLog/2013/23/05: Selenium @ maven
  352. DespoinaLog/test_graphviz
  353. DespoinaLog_BBMRI_USECASES: Insert data in application
  354. DespoinaLog_Index_search: Index search
  355. DespoinaLog_LL_Catalogue_use_cases: Matrix View
  356. DespoinaLog_molgenis14
  357. DespoinaLog_molgenis35Tomolgenis14
  358. DespoinaLog_peregrine: Peregrine
  359. DespoinaLog_update
  360. DevTeamTwoWeeks
  361. DiagnosticsMolgenis: Summary
  362. DocBookTest
  363. Documentation: High Performance Computing (HPC) Clusters
  364. DroparconDataManagement: Data Management
  365. DroparconStart: Droparcon - the Drosophila Parasitoids Consortium
  366. EnsemblTestDataSource
  367. ExampleUseCase
  368. FAQ
  369. FrontController: FrontController design
  370. GBrowse: Genome browser review
  371. GCCCluster
  372. GCCSopConvertIBDStageData: How to get the data out of the TCC stage database
  373. GCCSopNewEmployee
  374. GCCSopNewEmployeeGCC
  375. GCCSopUMCGNetwork: How to connect to wireless and wired network
  376. GCCluster
  377. GccStart: Welcome to the Groningen Genomics Coordination Centre
  378. GeneNetwork: GeneNetwork
  379. GenomicIslandsAnalysis: A quantitative account of genomic island acquisitions in prokaryotes
  380. GenotypeMolgenis: Genotype Information Management System (GIMS)
  381. GenotypePipeline: GenotypePipeline
  382. GidsUserStories: User stories for GIDS
  383. GonlDownload: Downloads
  384. GonlStart: Welcome to the Genome of the Netherlands
  385. GonlTemplate: Find here templates for documents
  386. GroupMeetings
  387. GroupMeetings/2010_01_11: Weekly Work Meeting Monday, January 11, 2010
  388. GuiPatterns: Gui Pattners
  389. GwasPipeline: GwasPipeline
  390. GwasPortal: GWAS Portal
  391. HPC: Documentation for the UMCG/LifeLines High Performance Computing (HPC) …
  392. HPC_deploy: SOP for central deployment of software and reference data sets
  393. HPC_v1: Documentation for the old HPC environment version 1.x
  394. HowtoScreen: Screen program
  395. INTRANET/LinuxHowto: Our brainbook of linux howto
  396. ImportExport: Import and Export
  397. IndexBasedSearch: Index based search on Database contents and ontology retrieved data
  398. Installation: Installation manual for XGAP 1.4 development
  399. IntellijTips
  400. InterMapTxt: InterMapTxt
  401. InterTrac: InterTrac Links
  402. InterWiki: Support for InterWiki links
  403. Internships: Available internship projects at the GCC
  404. IntraNet: Intranet
  405. IntraNet/LinuxHowto
  406. IntraNet/Meetings: Meeting notes
  407. Intranet/SequenceAnnotationPipeline: Pipeline overview
  408. JavaScript
  409. JessicaLog: Jessica's updates
  410. JessicaLog/2010-09-10: What I did
  411. JessicaLog/2010-09-17: What I did
  412. JessicaLog/2010-09-24: What I did
  413. JessicaLog/2010-10-01: What I did
  414. JessicaLog/2010-10-08: What I did
  415. JessicaLog/2010-10-15: What I did
  416. JessicaLog/2011-01-13: TODO List
  417. JorisLog
  418. JorisLog/2010/12/06
  419. JorisLog/2010/12/07
  420. JorisLog/2010/12/08
  421. JorisLog/2010/Week49
  422. JorisLog/2010/Week50
  423. JorisLog/49
  424. LIMS_Information: Illumina LIMS
  425. LifeLines: LIFELINES
  426. LifeLinesMeetings
  427. LifeLinesMeetings/2010_02_09: Notes on meeting 2010-02-09
  428. LifeLinesStories
  429. LifeWise
  430. LocusSpecificMolgenis: LocusSpecificMolgenis
  431. LuceneIndexBasedSearchManual: Lucene Index based Search Manual
  432. MageTabProject: MAGE-TAB Molgenis Project
  433. MailingList
  434. MainNav
  435. MappingDecorator: Decorators for database mappers
  436. MassPeak: MassPeak
  437. MatrixModule
  438. MatrixPlugin: Matrix Plugin
  439. MergingGenotypeData
  440. MetaNetwork: MetaNetwork
  441. MicroarrayMolgenis: Summary
  442. MinutesWeeklyDevMeetings
  443. Mockups
  444. Module/MatrixViewer
  445. Modules: Modules
  446. Modules/AnimalDb
  447. Modules/ApplyProtocol: Home page of Apply Protocols Module
  448. Modules/Auth: Authentication and Authorization module
  449. Modules/AuthModule/WishList: AuthModule 2.0 wishlist
  450. Modules/Batches: Idea
  451. Modules/Compute: Home of the compute module
  452. Modules/Compute/UsingRscripts: User stories for using R within the Compute module
  453. Modules/GenomeBrowser
  454. Modules/ImportWizard: ImportWizard
  455. Modules/Matrix: Matrix Data Viewer
  456. Modules/MatrixViewer
  457. Modules/MolgenisSettings: Brainstorm on MOLGENIS settings
  458. Modules/QTLFinder
  459. Modules/StudyBook: Study Book Module
  460. Modules/TableView: TableView: a uniform data viewer
  461. ModulesOld: Architectural overview
  462. MolApp
  463. MolenisBug: Some bugs that have been reported
  464. Molgenis-connect: Molgenis-connect
  465. MolgenisAddressBookExample: Generating MOLGENIS from scratch, the Address Book Example
  466. MolgenisAppStories: Stories for the research portal release of 31 dec 2011
  467. MolgenisApps: MOLGENIS Apps
  468. MolgenisApps/Architecture: Architecture overview
  469. MolgenisAppsStories
  470. MolgenisAsGalaxyDatasource: Using Molgenis as a datasource for Galaxy
  471. MolgenisBookShelf: MOLGENIS bookshelf
  472. MolgenisBookShelve
  473. MolgenisCommandLine: Running MOLGENIS from the commandline
  474. MolgenisComponents: MOLGENIS suite overview: modules and products
  475. MolgenisCore
  476. MolgenisDataModel: MOLGENIS data model mapping overview
  477. MolgenisDeployUnderOtherName: How to deploy a MOLGENIS project under a different name
  478. MolgenisDownload: Download latest version from Github
  479. MolgenisDownloads: Download as source code
  480. MolgenisDtd: MOLGENIS language definition
  481. MolgenisEmail: Emaling from within your MOLGENIS application
  482. MolgenisEnhancements: Enhancements for MOLGENIS on various levels
  483. MolgenisFaq: MOLGENIS FAQ
  484. MolgenisFile: MolgenisFile
  485. MolgenisFileHandler
  486. MolgenisFolderLayout: Layout of MOLGENIS projects
  487. MolgenisFromExisting: Extract MOLGENIS model from existing database
  488. MolgenisGeneratorBasics: MOLGENIS generator basics
  489. MolgenisGoogleGroup: Join the MOLGENIS Google group
  490. MolgenisGuide: MOLGENIS development manual
  491. MolgenisGuideOnePage
  492. MolgenisIndex
  493. MolgenisInternship: MOLGENIS related internships
  494. MolgenisLanguageReference: Language reference
  495. MolgenisLanguageReferenceOnePage: MOLGENIS language reference in one page (easy for searching and printing)
  496. MolgenisModules: Overview of MOLGENIS modules
  497. MolgenisMovies: Movies about MOLGENIS
  498. MolgenisMovies/DemoMovie: Example movie
  499. MolgenisOnEclipse: Eclipse install
  500. MolgenisOnEclipseHelios: How to develop MOLGENIS on Eclipse/Helios?
  501. MolgenisOnEclipseIndigo: Eclipse install
  502. MolgenisOnWindows: Get from a clean Windows install up to the point where you can …
  503. MolgenisPluginFramework: title
  504. MolgenisPlugins: List of Plugins
  505. MolgenisPolls: Quick Molgenis polls
  506. MolgenisPractice
  507. MolgenisProcessing: MolgenisProcessing
  508. MolgenisProgress2010_1: MOLGENIS progress update Jan - Jun 2010
  509. MolgenisProject: About MOLGENIS
  510. MolgenisProjects: Overview of Projects
  511. MolgenisScrum: GCC SCRUM page
  512. MolgenisScrum/Backlog: Backlog
  513. MolgenisScrum/Demo11.27: Notes from End-of-sprint demo 11.27, July 4 2011
  514. MolgenisScrum/LifeLinesStories: Selected user stories for the LifeLines research portal demo
  515. MolgenisScrum/Sprint11.06: MOLGENIS Research Platform - Sprint 1
  516. MolgenisScrum/Sprint11.09: MOLGENIS Research Platform - Sprint 2
  517. MolgenisScrum/Sprint11.12: MOLGENIS Research Platform - Sprint 11.12
  518. MolgenisScrum/Sprint11.16: MOLGENIS Research Platform - Sprint 11.16
  519. MolgenisScrum/Sprint11.20: MOLGENIS Research Platform - Sprint 11.20
  520. MolgenisScrum/Sprint11.24: MOLGENIS Research Platform - Sprint 11.20
  521. MolgenisServersFaq: FAQ for servers and VMs
  522. MolgenisServlet
  523. MolgenisSourceCode: MOLGENIS source code
  524. MolgenisStart: Rapid generation of biosoftware you want to have
  525. MolgenisSystemList: MOLGENIS is being used in the following projects:
  526. MolgenisTesting: MOLGENIS Testing Framework
  527. MolgenisTicketAttachments/Animal
  528. MolgenisTicketAttachments/BBMRI
  529. MolgenisTicketAttachments/Compute
  530. MolgenisTicketAttachments/GCC
  531. MolgenisTicketAttachments/MAGE
  532. MolgenisTicketAttachments/MOLGENIS
  533. MolgenisTicketAttachments/OntoCat
  534. MolgenisTicketAttachments/Pheno
  535. MolgenisTicketAttachments/XGAP
  536. MolgenisTicketFaq: How to make good tickets?
  537. MolgenisUiComponents: Molgenis UI components
  538. MolgenisWorkspaceBasics: Open the MOLGENIS workspace in Eclipse
  539. MoveDatabaseToOtherPartition: How to move a MySQL database to another partition
  540. MsStart: Participant Laboratories of the Interfaculty Mass Spectrometry Centre …
  541. MySqlManual: MySQL 5.1 installation 'manual' for Mac OSX 10.6 x86_64
  542. MydasServerConfig
  543. MzMatch
  544. NGS
  545. NgsWorkbench: Next Generation Sequencing workbench
  546. NpcProject
  547. ObservMeetings: Minutes of meetings
  548. ObservMeetings/2012_04_03: Minutes OmicsConnect 2012_04_03
  549. ObservMeetings/OmicsConnect
  550. ObservStart: Welcome to Observ-OM and Observ-TAB
  551. ObservStart/OmicsConnect: wanted entities
  552. OntoCAT
  553. OntoCat: OntoCAT
  554. OntocatDownload: Downloads
  555. OntocatGuide: OntoCAT Guide
  556. OntocatInstallation: Installation
  557. OntocatStart: About OntoCAT
  558. PageTemplates: Wiki Page Templates
  559. PathoKB: PathoKB
  560. PeakML: PeakML
  561. PepchipMolgenis
  562. PhenoFlow
  563. PhenoWorkgroup: Pheno Workgroup
  564. PhenotypeMolgenis
  565. PipelineMolgenis: a MOLGENIS based Platform for Proteomics
  566. PostGreSQLBasedServerDeploy: Deployment SOP for developers
  567. ProjectPeople: The people behind AnimalDB
  568. RESTful_architecture: "Representational State Transfer (REST) is a style of architecture for …
  569. Reasoning: Reasoning in OntoCAT
  570. RecentChanges
  571. RecentlyClosedTickets: Recently closed tickets
  572. RichWizardModule
  573. Roadmap: Roadmap
  574. RobotsTxt
  575. Route: Route description to GCC
  576. RprojectInterface: Using R for data analysis.
  577. RqtlIntegration: R/qtl interface
  578. RqtlPackage: R/QTL package
  579. SORTA: SORTA
  580. SandBox: The Sandbox
  581. SearchModule: SearchModule
  582. SemanticLayer: Semantic Layer
  583. SequencingMolgenis
  584. SequencingTools
  585. SequencingWiki: MOLGENIS Sequencing Wiki
  586. ShowAndTellProposals: Suggestions for the upcoming show-n-tell meetings
  587. SopConvertLifeLinesGenoData: SOP for converting LifeLines Geno Data for one study
  588. SopDowngradeJavaVersion
  589. SopNewUser
  590. SopPrintScrum: How to print the scrum cards
  591. SopUpdateBbmriApp:
  592. SopUseGenericImporter: Demo
  593. SopUseJQuerytree: Demo
  594. StoryBrowseCatalogAndSelectFeatures: As a biobank data manager, I want to have a Catalog of the biobank …
  595. StoryConvertGenoData: As a admin I want to prepare geno data linked to pheno data
  596. StoryConvertPhenoData: As a LL data manager, I want to load data from publish layer into EAV …
  597. StoryCreateBiobankCatalog: Create biobank catalogue
  598. StoryDownloadAsPlink: As a user, I want to select a phenotype and a list of individuals in …
  599. StoryImputeGenoData: We must have the imputed Third Release geno data on gpfs storage
  600. StoryLifeLinesFirstRelease: As a Projectleader I want to Provide access to Lifelines data on …
  601. StoryLinkWomToVm: As LL admin we want to connect each WOM to the proper VM
  602. StoryNewMolgenisVm: As an admin we want to deploy new molgenis VMs with cluster access
  603. StoryViewAndFilterInMatrix
  604. StudentProjects: Student projects for NGS
  605. SystemsGenetics: SystemsGenetics
  606. TarGet
  607. TavernaInterface: Using the Taverna interface
  608. Team1
  609. Team2
  610. TeamMembers: Members of the Genomics Coordination Center
  611. TemplateModulePage: Template module
  612. TermsAndConditions: Terms and Conditions
  613. Test
  614. TestLinkNew
  615. TestPage
  616. TestProtocol: Regression testing protocol
  617. TicketQuery: TicketQuery Wiki Macro
  618. TicketStats
  619. TitleIndex
  620. TracAccessibility: Accessibility Support in Trac
  621. TracAdmin: TracAdmin
  622. TracBackup: Trac Backup
  623. TracBatchModify: Trac Ticket Batch Modification
  624. TracBrowser: The Trac Repository Browser
  625. TracCgi: Installing Trac as CGI
  626. TracChangeLog: Change Log
  627. TracChangeset: Trac Changeset Module
  628. TracEnvironment: The Trac Environment
  629. TracFastCgi: Trac with FastCGI
  630. TracFineGrainedPermissions: Fine grained permissions
  631. TracGuide: The Trac User and Administration Guide
  632. TracHackExamples: This is a sandbox of all kinds of cool Trac tricks
  633. TracImport: Importing ticket data
  634. TracIni: The Trac Configuration File
  635. TracInstall: Trac Installation Guide for 1.2
  636. TracInterfaceCustomization: Customizing the Trac Interface
  637. TracLinks: Trac Links
  638. TracLogging: Trac Logging
  639. TracModPython: Trac and mod_python
  640. TracModWSGI: Trac and mod_wsgi
  641. TracNavigation: Trac Navigation
  642. TracNotification: Email Notification of Ticket Changes
  643. TracPermissions: Trac Permissions
  644. TracPlugins: Trac plugins
  645. TracQuery: Trac Ticket Queries
  646. TracReports: Trac Reports
  647. TracRepositoryAdmin: Repository Administration
  648. TracRevisionLog: Viewing Revision Logs
  649. TracRoadmap: The Trac Roadmap
  650. TracRss: Using RSS with Trac
  651. TracSearch: Using Search
  652. TracStandalone: Tracd
  653. TracSupport: Trac Support
  654. TracSyntaxColoring: Syntax Coloring of Source Code
  655. TracTickets: The Trac Ticket System
  656. TracTicketsCustomFields: Custom Ticket Fields
  657. TracTimeline: The Trac Timeline
  658. TracTodoList
  659. TracUnicode: Unicode Support in Trac
  660. TracUpgrade: Upgrade Instructions
  661. TracWiki: The Trac Wiki System
  662. TracWorkflow: The Trac Ticket Workflow System
  663. TransparentMultiHopSSHNewLobby: Transparent multi-hop SSH
  664. Tutorial: Extended tutorials
  665. Tutorial/FAQ: === HTTP Status 404 – error ===
  666. Tutorial/Molgenis_Basics
  667. Tutorial/Setup_MySQL_database
  668. Tutorial/Setup_Tomcat_server: MySQL 5.1 installation 'manual' for Mac OSX 10.6 x86_64
  669. Tutorial/Setup_test_molgenis
  670. TwitterBox
  671. UseCasesAte002Impl01: notes on implementation of usecase 1:
  672. UserInterface: XGAP user interface
  673. UserManagerPluginPictures: UserManager?'s Attachments
  674. VCFAggregateScriptManual: Running the VCF aggregration and de-sampling procedure
  675. VMRequirements: Requirements Molgenis application VM's
  676. WebContent
  677. WikiDeletePage: Deleting a Wiki Page
  678. WikiFormatting: WikiFormatting
  679. WikiHtml: Using HTML in Wiki Text
  680. WikiMacros: Trac Macros
  681. WikiNewPage: Steps to Add a New Wiki Page
  682. WikiPageNames: Wiki Page Names
  683. WikiProcessors: Wiki Processors
  684. WikiRestructuredText: reStructuredText Support in Trac
  685. WikiRestructuredTextLinks: TracLinks in reStructuredText
  686. WikiStart: Welcome to MOLGENIS
  687. WikiStartOld: Welcome to the Genomics Coordination Centre
  688. WikiTipsAndTricks: How to generate a table of contents
  689. WormBase
  690. XGAPWorkgroup: Scenario 1
  691. XQtlGuide: xQTL Workbench Manual
  692. Xgap: Open tickets
  693. XgapCollaboration
  694. XgapContributors: Contributors to XGAP
  695. XgapCustomization: XGAP Customization
  696. XgapDataModel: XGAP Object Model
  697. XgapDevelopment: Development installation of XGAP
  698. XgapDownload: Download XGAP
  699. XgapEnhancements: Ideas for XGAP enhancements
  700. XgapEnhancements/MatrixInterface: Matrix Interface enhancements
  701. XgapExchange: How to convert between XGAP and other formats
  702. XgapFormatReference: XGAP TAB format reference
  703. XgapFormatTutorial: How to describe an investigation in XGAP format
  704. XgapInstall: How to install XGAP locally
  705. XgapMolgenis: XGAP - eXtensible Genotype And Phenotype platform
  706. XgapObjectModel: User manual for XGAP
  707. XgapOverview: Overview of the eXtensible Genotype And Phenotype platform
  708. XgapPluginsAvailable: XGAP plugins
  709. XgapProject: XgapProject: eXtensible Genotype and Phenotype platform
  710. XgapSourceCode: XGAP Source Code
  711. XgapStart: Welcome to the eXtensible Genotype And Phenotype platform (XGAP)
  712. XgapUpdateDatabase
  713. adbPrivate/ArchiveIndex
  714. addAUTH: Add at your molgenis.properties file :
  715. bbmri_subtask3: Start d2r on molgenis n3 mapping on molgenis4phenotype :
  716. bbmri_task1
  717. datasets
  718. diagnostic
  719. eBiobank
  720. generateArtificialGwas: Required tools
  721. genomics: MOLGENIS Diagnostic Platform for Clinical Genomics
  722. github_molgenis: configure
  723. intranet
  724. ngslimsroadmap: NGS LIMS Roadmap (Wet-lab only)
  725. r: ontoCAT R package
  726. research: MOLGENIS Research
  727. xQTL: xQTL workbench - Manual
  728. xQTLAdministratorDatabase: xQTL workbench - Manage database and storage
  729. xQTLAdministratorDownload: xQTL workbench - Installation instructions
  730. xQTLAdministratorInstall: xQTL workbench - Installation and maintanance
  731. xQTLAdministratorJobs: xQTL workbench - Setup job submission
  732. xQTLAdministratorPermissions: xQTL workbench - Manage users and permissions
  733. xQTLAppUserStories: xQTL workbench application user stories
  734. xQTLBioinformaticianAnalysis: xQTL workbench - Setup a new runnable analysis
  735. xQTLBioinformaticianGalaxy: xQTL workbench - Galaxy and Cloud
  736. xQTLBioinformaticianRCheatSheet: xQTL workbench - Cheat sheet for R scripting
  737. xQTLBioinformaticianReview: Feedback on WormQTL, may 2012
  738. xQTLBioinformaticianScript: xQTL workbench - Add a new R script
  739. xQTLBioinformaticianTag: xQTL workbench - Tag data and configure parameters
  740. xQTLBiologistBrowse: xQTL workbench - Browse or search available data
  741. xQTLBiologistImport: xQTL workbench - Import new data
  742. xQTLBiologistLogin: xQTL workbench - Registration and login
  743. xQTLBiologistRun: xQTL workbench - Run QTL mapping
  744. xQTLIntroduction: xQTL workbench - Introduction
  745. xQTLTutorialBiologistBrowsingResults: xQTL workbench - Tutorial for biologists: Browse and …
  746. xQTLTutorialBiologistInspectingData: xQTL workbench - Tutorial for biologists: Inspecting your …
  747. xQTLTutorialBiologistRunningAnalysis: xQTL workbench - Tutorial for biologists: Running a basic …
  748. xQTLTutorialBiologistUploadingData: xQTL workbench - Tutorial for biologists: Uploading a new …
  749. xQTLTutorialRqtl: xQTL workbench - Tutorial: R/qtl
  750. xQTLTutorialStart: xQTL workbench - Tutorial for biologists: Overview of the …
  751. xQTLUserReview: Feedback 2011_01_16
  752. xgap
  753. xgap/Introduction: Overview of Xgap
  754. xqtl: xQTL workbench - Manual

Methods/tools for detection of fusion gene transcripts in RNA sequencing

  1. Analysis of trans-spliced transcripts in RNA seq data - Lennart / Birgit / Analyse team

Single cell RNA sequencing quantification

  1. Single cell RNA seq quantification - Gerben / Pieter van der Vlies / Iris? [waar komt de data vandaan?]

Improved detection of regulatory transcription factor binding sites in non-coding DNA by merging sequence (context) with in vivo DNA accessibility data

  1. Improved DNA Motif finding - Iris / Pieter

Course Schedule

Venue

Course will be organized at or near the UMCG Genetics department, which is located on the 5th floor of the European Research Institute for the Biology of Aging - ERIBA building plus the complete 5th and partial 6th floor of the adjacent Dentistry building. The address for both buildings is 

Antonius Deusinglaan 1
9713 AV Groningen
Building Room Name
3226 302 ERIBA building, meeting room, 3rd floor, in the corner and next to auditorium
3226 314 ERIBA building, auditorium, 3rd floor
3211 519 Dentistry building, meeting room without a name opposite the secretary, 5th floor, opposite the secretary and near elevators
3211 501 Dentistry building, meeting room 1, 5th floor, end of corridor
3211 flex desks Dentistry building, 5th floor
3226 flex desks ERIBA building, 5th floor

Regular events

Day Time What Where
Mondays 09:15 - 09:30 Course SCRUM in weeks 2-6 TBA instant meeting room 3211 5th floor
Mondays 12:00 - 13:00 Research meeting (ADCB groups) 3226-314 ERIBA auditorium
Tuesdays 08:45 - 10:00 Research meeting (Entire Genetics dept.) 3226-314 ERIBA Auditorium
Tuesdays 10:15 - 10:30 Course SCRUM in weeks 2-6 TBA instant meeting room 3211 5th floor
Wednesdays 09:15 - 09:30 Course SCRUM in weeks 2-6 TBA instant meeting room 3211 5th floor
Thursdays 09:15 - 09:30 Course SCRUM in weeks 2-6 TBA instant meeting room 3211 5th floor
Thursdays 12:00 - 13:00 Literature club (Wijmenga/Weersma/Franke groups) 3226-314 ERIBA auditorium
Fridays 09:15 - 09:30 Course SCRUM in weeks 2-6 TBA instant meeting room 3211 5th floor

Week 1

Monday 01-02-2016

When What Where
09:15 - 09:45 Course kick off (Pieter Neerincx) 3211-501 Room "1"
09:45 - 10:00 Break
10:00 - 10:45 Lecture: Next Generation Sequencing (Morris Swertz) 3211-501 Room "1"
10:45 - 11:00 Break
11:00 - 11:45 Project intro: (Birgit Sikkema-Raddatz / Lennart Johansson)3211-501 Room "1"
11:45 - 12:00 Break
12:00 - 13:00 Research lunch meeting (ADCB groups) 3226-314 ERIBA Auditorium
13:00 - 13:45 Bash scripting intro part I (Lennart Johansson) 3211-501 Room "1"
13:45 - 14:00 Break
14:00 - 17:00 Bash scripting tutorials 3211-501 Room "1"

Tuesday 02-02-2016

When What Where
08:45 - 09:45 Research meeting (Entire genetics dept.) 3226-314 ERIBA Auditorium
09:45 - 10:00 Break
10:00 - 10:45 Lecture: Experimental Design (Lude Franke) 3211-501 Room "1"
10:45 - 11:00 Break
11:00 - 11:45 Lecture: GWAS (Lude Franke) 3211-501 Room "1"
12:00 - 13:00 Lunch break
13:00 - 13:45 Bash scripting intro part II (Lennart Johansson) 3211-501 Room "1"
13:45 - 14:00 Break
14:00 - 17:00 Bash scripting tutorials 3211-501 Room "1"

Wednesday 03-02-2016

When What Where
09:00 - 12:00 R-turorial part I (Annique Claringbould) 3211-501 Room "1"
12:00 - 13:00 Lunch break
13:00 - 17:00 R-turorial part II (Annique Claringbould) 3211-501 Room "1"

Thursday 04-02-2016

When What Where
09:00 - 09:45 Project intro: Quantification for RNA seq (Niek de Klein) 3211-501 Room "1"
09:45 - 10:00 Break
10:00 - 10:45 Project intro: mtDNA analysis (Pieter Neerincx) 3211-501 Room "1"
10:45 - 11:00 Break
11:00 - 11:45 Project intro: DNA Motif finding (Iris Jonkers) 3211-501 Room "1"
12:00 - 13:00 Lunch break
13:00 - 13:45 Lecture: Gene Expression (Lude Franke) 3211-501 Room "1"
13:45 - 14:00 Break
14:00 - 14:45 Lecture: Integrating Datasets (Lude Franke) 3211-501 Room "1"
14:45 - 15:00 Break
15:00 - 15:45 Lecture: Data visualization (Lude Franke) 3211-501 Room "1"
15:45 - 16:00 Break
16:00 - 16:45 Project intro: Single cell RNA seq (Pieter van der Vlies) 3211-501 Room "1"

Friday 05-02-2016

When What Where
09:00 - 09:45 Project intro: RNA editing (Yang Li) 3211-501 Room "1"
09:45 - 10:00 Deadline: choose project. 3211-501 Room "1"
10:00 - 12:00 Getting familiar with your project:
Search literature,
Design experiment and
write (validation) plan 		flex desks
12:00 - 13:00 Lunch break
13:00 - 17:00 Getting familiar with your project:
Search literature,
Design experiment and
write (validation) plan 		flex desks

Weeks 2-5

Monday 08-02-2016

When What Where
09:15 - 09:30 Scrum TBA
09:30 - 12:00 Finish experimental design / (validation) plan flex desks
12:00 - 13:00 Research lunch meeting (Wijmenga/Weersma/Franke/Swertz groups) 3226-314 ERIBA Auditorium
12:00 - 17:00 Finish experimental design / (validation) plan flex desks
17:00 Deadline: have experimental design / (validation) plan approved by your supervisor(s) TBA

From Tuesday 09-02-2016 onwards

  • Regular meetings
  • Execute your experiment / plan

Week 6

From Monday 07-03-2016 onwards

  • Regular meetings
  • Write report and prepare presentation.

Thursday 10-03-2015

When What Where
13:00 - 13:30 Project Presentation I TBA
13:30 - 14:00 Project Presentation II TBA
14:00 - 14:15 Break
14:15 - 14:45 Project Presentation III TBA
14:45 - 15:15 Project Presentation IV TBA
15:15 - 15:30 Break
15:30 - 16:00 Project Presentation V TBA
16:00 - 16:30 Project Presentation VI TBA
16:30 - 17:00 Wrap up (Pieter) TBA

Friday 11-03-2015

When What Where
17:00 Report submission deadline Your project supervisor's mailbox

Contact

Morris Swertz coordinator m.a.swertz AT rug DOT nl
Pieter Neerincx daily supervision pieter.neerincx AT gmail DOT com